Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000425.1-P | Field mustard | nucleus | 98.32 | 62.19 |
| CDY01757 | Canola | cytosol | 10.06 | 33.96 |
| CDY52473 | Canola | nucleus | 51.96 | 32.75 |
| CDY01699 | Canola | nucleus, plastid | 50.28 | 31.91 |
| CDX99687 | Canola | nucleus | 50.28 | 31.8 |
| CDY01695 | Canola | nucleus | 53.63 | 31.07 |
| CDY11709 | Canola | nucleus | 24.02 | 26.06 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 41.9 | 25.51 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 40.78 | 24.58 |
| CDY10787 | Canola | plastid | 39.66 | 24.57 |
| PGSC0003DMT400043047 | Potato | cytosol | 22.91 | 22.28 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 43.02 | 22.06 |
| CDY12498 | Canola | nucleus | 31.28 | 20.59 |
| CDY25763 | Canola | nucleus | 30.17 | 19.85 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 21.79 | 19.5 |
| CDY27008 | Canola | nucleus | 35.2 | 19.15 |
| CDY47873 | Canola | nucleus | 34.64 | 19.14 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.79 | 17.65 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 25.14 | 15.96 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 25.14 | 15.96 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 18.99 | 15.89 |
| CDY70665 | Canola | nucleus | 28.49 | 15.74 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 24.02 | 15.64 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 23.46 | 15.33 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 22.91 | 14.96 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 22.91 | 14.96 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 22.91 | 14.96 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 23.46 | 14.95 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 22.35 | 14.87 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 23.46 | 14.79 |
| CDX96138 | Canola | nucleus | 27.93 | 14.71 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 20.67 | 14.68 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 24.58 | 14.67 |
| KRH42263 | Soybean | nucleus | 25.7 | 14.38 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 21.23 | 14.29 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 21.79 | 14.23 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 22.35 | 14.18 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 21.79 | 14.18 |
| KRH58384 | Soybean | nucleus | 25.14 | 14.06 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 22.35 | 14.04 |
| TraesCS1A01G070000.1 | Wheat | plastid | 18.99 | 13.99 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 20.67 | 13.91 |
| CDY36211 | Canola | nucleus | 27.93 | 13.85 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 20.67 | 13.81 |
| CDY36209 | Canola | plastid | 16.2 | 13.74 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 21.23 | 13.48 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 21.79 | 13.36 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 20.67 | 13.31 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 22.35 | 13.03 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 22.35 | 13.03 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 21.79 | 13.0 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 24.58 | 12.94 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 24.02 | 12.84 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 21.23 | 12.79 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 24.02 | 12.68 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 18.99 | 12.64 |
| OQU86453 | Sorghum | cytosol | 15.08 | 12.62 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 19.55 | 12.5 |
| KXG37941 | Sorghum | cytosol | 19.55 | 12.5 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 20.67 | 12.46 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 20.67 | 12.46 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 20.67 | 12.37 |
| TraesCSU01G045900.1 | Wheat | cytosol | 20.67 | 12.37 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 23.46 | 12.35 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 23.46 | 12.35 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 20.67 | 12.29 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 20.11 | 12.29 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 17.32 | 12.25 |
| EES00387 | Sorghum | nucleus | 21.79 | 12.23 |
| KXG32009 | Sorghum | nucleus | 20.11 | 12.16 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 6.15 | 12.09 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 22.35 | 12.05 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 18.44 | 12.0 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 18.44 | 11.91 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.2 | 11.74 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 18.99 | 11.64 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 21.79 | 11.61 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 22.35 | 11.36 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 16.76 | 11.32 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 20.67 | 11.31 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 18.44 | 11.3 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 20.67 | 11.28 |
| OQU77422 | Sorghum | cytosol | 17.88 | 11.19 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 20.67 | 11.18 |
| Solyc03g042550.1.1 | Tomato | nucleus | 22.35 | 11.11 |
| PGSC0003DMT400043050 | Potato | nucleus | 23.46 | 11.02 |
| Zm00001d041049_P001 | Maize | nucleus | 20.11 | 11.01 |
| Solyc03g034460.2.1 | Tomato | nucleus | 21.79 | 10.83 |
| CDX92848 | Canola | nucleus | 18.44 | 10.82 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 18.99 | 10.79 |
| CDY06889 | Canola | cytosol | 17.88 | 10.77 |
| CDY57244 | Canola | cytosol | 18.44 | 10.71 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 16.76 | 10.71 |
| CDX71977 | Canola | cytosol | 18.44 | 10.65 |
| CDX88968 | Canola | cytosol | 18.44 | 10.61 |
| CDY67927 | Canola | cytosol | 18.44 | 10.61 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 20.11 | 10.56 |
| HORVU2Hr1G118840.1 | Barley | plastid | 21.79 | 10.51 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 21.79 | 10.46 |
| OQU78944 | Sorghum | nucleus | 18.99 | 10.43 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 21.79 | 10.4 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 21.79 | 10.4 |
| CDY14268 | Canola | nucleus | 18.44 | 10.31 |
| CDX97399 | Canola | nucleus | 18.44 | 10.28 |
| CDY14808 | Canola | cytosol | 17.32 | 10.26 |
| CDX89221 | Canola | nucleus | 18.44 | 10.25 |
| CDY19018 | Canola | nucleus | 18.44 | 10.25 |
| Solyc03g034450.2.1 | Tomato | nucleus | 22.35 | 10.2 |
| CDX89132 | Canola | cytosol | 18.44 | 10.12 |
| CDY56244 | Canola | cytosol | 16.2 | 10.03 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 16.2 | 10.0 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 15.64 | 9.96 |
| CDX67865 | Canola | nucleus | 17.88 | 9.91 |
| CDY25077 | Canola | nucleus | 17.88 | 9.91 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 19.55 | 9.89 |
| CDY43950 | Canola | nucleus | 17.88 | 9.85 |
| EES17731 | Sorghum | nucleus | 18.99 | 9.83 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 19.55 | 9.78 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 20.67 | 9.69 |
| TraesCSU01G021700.1 | Wheat | nucleus | 19.55 | 9.59 |
| TraesCSU01G231400.1 | Wheat | nucleus | 18.44 | 9.54 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 24.02 | 9.43 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 24.02 | 9.37 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 18.99 | 9.32 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 18.99 | 9.32 |
| OQU77425 | Sorghum | nucleus | 19.55 | 9.31 |
| CDY64066 | Canola | cytosol | 5.59 | 9.26 |
| KXG21322 | Sorghum | nucleus | 18.99 | 9.09 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 23.46 | 9.05 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.64 | 9.03 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 10.06 | 9.0 |
| CDY35390 | Canola | nucleus | 15.08 | 8.79 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 16.2 | 8.79 |
| CDY38819 | Canola | nucleus | 9.5 | 8.76 |
| CDY22549 | Canola | nucleus | 15.08 | 8.74 |
| EES02574 | Sorghum | nucleus | 21.23 | 8.48 |
| CDY06056 | Canola | cytosol | 11.73 | 8.02 |
| CDX75727 | Canola | cytosol | 9.5 | 7.94 |
| EES17735 | Sorghum | mitochondrion | 19.55 | 7.8 |
| KXG32014 | Sorghum | nucleus | 9.5 | 7.73 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 8.94 | 7.24 |
| CDX82523 | Canola | cytosol | 8.38 | 7.01 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 15.64 | 6.91 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 10.61 | 6.88 |
| CDY67899 | Canola | cytosol, plastid | 6.15 | 6.63 |
| CDY67278 | Canola | cytosol | 2.79 | 6.17 |
| CDY01758 | Canola | cytosol | 11.17 | 4.58 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.68 | 3.03 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078D7Y0 | EnsemblPlants:CDX83363 | ProteinID:CDX83363 | ProteinID:CDX83363.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00138926001 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniPathway:UPA00143 | UniParc:UPI0004EE011D | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : |
Description
BnaA03g21430D
Coordinates
chrLK031832:-:1199160..1199768
Molecular Weight (calculated)
20407.8 Da
IEP (calculated)
5.911
GRAVY (calculated)
-0.013
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: METLLKSVFL PCQNAKYGCT ETVAFGKEPT HEKDCTFAEY CCCPVQYCNY AGSYIDLYLH YVSSNHMTVS EQIRDELCIG ISCGIKMNIM QCFKEPFGVY
101: VTVSCIAPSI QEVGPFSYRL IYTVDGQTII YKSSEMKKIR EVSLQTPQDN YMLIPHSLLC GESLEMRLCI KMLNIEHHS
101: VTVSCIAPSI QEVGPFSYRL IYTVDGQTII YKSSEMKKIR EVSLQTPQDN YMLIPHSLLC GESLEMRLCI KMLNIEHHS
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.