Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU78944 | Sorghum | nucleus | 88.38 | 88.65 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 65.14 | 64.94 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 65.44 | 64.65 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 66.36 | 64.58 |
| Os06t0311300-01 | Rice | plasma membrane | 48.93 | 64.0 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 65.14 | 59.5 |
| CDY11709 | Canola | nucleus | 14.98 | 29.7 |
| KRH58384 | Soybean | nucleus | 28.75 | 29.38 |
| KRH42263 | Soybean | nucleus | 28.75 | 29.38 |
| Bra025434.1-P | Field mustard | nucleus | 24.46 | 28.17 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 17.13 | 28.0 |
| CDX99687 | Canola | nucleus | 24.16 | 27.92 |
| CDY52473 | Canola | nucleus | 24.16 | 27.82 |
| AT5G37910.1 | Thale cress | nucleus | 22.63 | 26.81 |
| CDY01699 | Canola | nucleus, plastid | 22.94 | 26.6 |
| CDY36209 | Canola | plastid | 17.13 | 26.54 |
| Bra018266.1-P | Field mustard | plastid | 23.24 | 26.3 |
| CDY10787 | Canola | plastid | 23.24 | 26.3 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.74 | 26.24 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.68 | 26.09 |
| Bra022858.1-P | Field mustard | nucleus | 23.55 | 25.33 |
| Zm00001d040046_P001 | Maize | cytosol, mitochondrion, nucleus | 17.13 | 25.0 |
| Bra000425.1-P | Field mustard | nucleus | 21.41 | 24.73 |
| CDY25763 | Canola | nucleus | 20.49 | 24.63 |
| CDY12498 | Canola | nucleus | 20.49 | 24.63 |
| AT5G37870.1 | Thale cress | nucleus | 21.1 | 24.56 |
| Bra012354.1-P | Field mustard | cytosol | 20.18 | 24.26 |
| AT1G66630.1 | Thale cress | cytosol | 22.32 | 24.09 |
| Bra028395.1-P | Field mustard | nucleus | 23.85 | 24.07 |
| CDY47873 | Canola | nucleus | 23.85 | 24.07 |
| PGSC0003DMT400043050 | Potato | nucleus | 27.83 | 23.88 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.41 | 23.81 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 19.57 | 23.79 |
| AT5G37930.1 | Thale cress | nucleus | 25.38 | 23.78 |
| AT1G66620.1 | Thale cress | nucleus | 22.63 | 23.64 |
| AT5G37890.1 | Thale cress | nucleus | 20.49 | 23.43 |
| CDY27008 | Canola | nucleus | 23.55 | 23.4 |
| AT1G66650.1 | Thale cress | nucleus | 23.24 | 23.1 |
| Solyc03g034460.2.1 | Tomato | nucleus | 25.38 | 23.06 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 20.8 | 22.9 |
| Solyc03g034450.2.1 | Tomato | nucleus | 27.22 | 22.7 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 23.55 | 22.06 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.16 | 21.94 |
| Bra004402.1-P | Field mustard | nucleus | 21.1 | 21.77 |
| AT5G37900.1 | Thale cress | nucleus | 15.9 | 21.58 |
| Solyc03g042520.1.1 | Tomato | nucleus | 20.18 | 21.29 |
| Bra004174.1-P | Field mustard | nucleus | 22.94 | 21.25 |
| CDY01695 | Canola | nucleus | 19.57 | 20.71 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.01 | 20.11 |
| CDY70665 | Canola | nucleus | 19.88 | 20.06 |
| AT1G66610.1 | Thale cress | nucleus | 22.32 | 19.95 |
| CDX96138 | Canola | nucleus | 20.49 | 19.71 |
| Bra019710.1-P | Field mustard | nucleus | 20.49 | 19.59 |
| Bra004176.1-P | Field mustard | nucleus | 20.18 | 19.58 |
| Zm00001d015123_P001 | Maize | cytosol | 18.35 | 19.17 |
| AT5G62800.1 | Thale cress | nucleus | 20.18 | 18.97 |
| AT1G66660.2 | Thale cress | nucleus | 19.57 | 18.39 |
| Zm00001d022401_P002 | Maize | cytosol | 16.82 | 18.21 |
| CDY36211 | Canola | nucleus | 19.88 | 18.01 |
| Zm00001d029203_P002 | Maize | cytosol | 16.51 | 17.88 |
| Zm00001d010403_P001 | Maize | cytoskeleton, nucleus, peroxisome | 17.43 | 16.33 |
| Zm00001d015952_P001 | Maize | nucleus | 16.82 | 16.13 |
| Zm00001d037790_P001 | Maize | cytoskeleton, nucleus, peroxisome | 16.82 | 15.94 |
| Zm00001d053289_P001 | Maize | cytosol | 16.82 | 15.85 |
| CDY01757 | Canola | cytosol | 2.45 | 15.09 |
| CDY01758 | Canola | cytosol | 15.6 | 11.67 |
Protein Annotations
| EntrezGene:100273809 | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:B4FXK9 | EMBL:BT041847 |
| EMBL:EU976718 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016874 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 |
| ProteinID:ONM32296.1 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF32 | InterPro:SINA-like |
| SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI00017B7DE6 | EnsemblPlantsGene:Zm00001d041049 | EnsemblPlants:Zm00001d041049_P001 |
| EnsemblPlants:Zm00001d041049_T001 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
E3 ubiquitin-protein ligase SINA-like 10
Coordinates
chr3:+:92907263..92913722
Molecular Weight (calculated)
35687.1 Da
IEP (calculated)
6.159
GRAVY (calculated)
-0.210
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKFSFNDAD EDPPTFSSEG EKRKRDDGPG EAAASGGPSK ARILTVEGEE QDGGAVVGAG RAEGNGSKGV ETVVGGEADG ISVRIDPDVL DCSICFDPLQ
101: PPLYQCQNGH VACFSCWSRL TNKCHICSSD ANFVRNIALE KVVESVKSSC SYAKWGCNKL VSYACRNAHE ESCLFAPSMC PIPGCGYRGF TGWWSGHFLT
201: NHNSDGLRFS YGQCFDVSLE MSVPFLVLLA EDDHLFIFIN KNVIPFGHAL SVCCLRTGNL NWNFLYEMRA TSKGNTKNSL QLKASVTNTR EWRGLNPTEV
301: FLLVPYAFSK SSKLTLNVSI ERVADVK
101: PPLYQCQNGH VACFSCWSRL TNKCHICSSD ANFVRNIALE KVVESVKSSC SYAKWGCNKL VSYACRNAHE ESCLFAPSMC PIPGCGYRGF TGWWSGHFLT
201: NHNSDGLRFS YGQCFDVSLE MSVPFLVLLA EDDHLFIFIN KNVIPFGHAL SVCCLRTGNL NWNFLYEMRA TSKGNTKNSL QLKASVTNTR EWRGLNPTEV
301: FLLVPYAFSK SSKLTLNVSI ERVADVK
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.