Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G531400.2 | Wheat | nucleus | 92.26 | 93.66 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 91.07 | 93.29 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 89.58 | 84.08 |
| Os06t0311300-01 | Rice | plasma membrane | 50.3 | 67.6 |
| Zm00001d041049_P001 | Maize | nucleus | 64.58 | 66.36 |
| OQU78944 | Sorghum | nucleus | 63.69 | 65.64 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 20.24 | 31.78 |
| CDX99687 | Canola | nucleus | 25.89 | 30.74 |
| Bra025434.1-P | Field mustard | nucleus | 25.89 | 30.63 |
| CDY52473 | Canola | nucleus | 25.6 | 30.28 |
| CDY36209 | Canola | plastid | 18.75 | 29.86 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 24.11 | 29.56 |
| CDY01699 | Canola | nucleus, plastid | 24.7 | 29.43 |
| KRH42263 | Soybean | nucleus | 27.38 | 28.75 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.96 | 28.5 |
| KRH58384 | Soybean | nucleus | 27.08 | 28.44 |
| CDY11709 | Canola | nucleus | 13.69 | 27.88 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 22.02 | 27.01 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 22.32 | 26.6 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 21.73 | 26.45 |
| AT5G37870.1 | Thale cress | nucleus | 22.02 | 26.33 |
| Bra022858.1-P | Field mustard | nucleus | 23.51 | 25.99 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.96 | 25.79 |
| AT1G66630.1 | Thale cress | cytosol | 23.21 | 25.74 |
| AT5G37910.1 | Thale cress | nucleus | 21.13 | 25.72 |
| Bra018266.1-P | Field mustard | plastid | 22.02 | 25.61 |
| CDY10787 | Canola | plastid | 22.02 | 25.61 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.99 | 25.54 |
| Bra000425.1-P | Field mustard | nucleus | 21.43 | 25.44 |
| CDY25763 | Canola | nucleus | 20.54 | 25.37 |
| CDY12498 | Canola | nucleus | 20.54 | 25.37 |
| CDY47873 | Canola | nucleus | 24.4 | 25.31 |
| Bra028395.1-P | Field mustard | nucleus | 24.4 | 25.31 |
| Bra012354.1-P | Field mustard | cytosol | 20.24 | 25.0 |
| AT5G37890.1 | Thale cress | nucleus | 21.13 | 24.83 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 22.02 | 24.75 |
| AT5G37930.1 | Thale cress | nucleus | 25.6 | 24.64 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 19.64 | 24.63 |
| CDY27008 | Canola | nucleus | 24.11 | 24.62 |
| AT1G66620.1 | Thale cress | nucleus | 22.92 | 24.6 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 21.73 | 24.58 |
| AT5G37900.1 | Thale cress | nucleus | 17.56 | 24.48 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.13 | 24.15 |
| Solyc03g034460.2.1 | Tomato | nucleus | 25.6 | 23.89 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 19.05 | 23.79 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 20.83 | 23.57 |
| PGSC0003DMT400043050 | Potato | nucleus | 26.49 | 23.36 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 23.21 | 23.28 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.4 | 22.78 |
| Solyc03g034450.2.1 | Tomato | nucleus | 26.19 | 22.45 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 23.21 | 22.35 |
| AT1G66650.1 | Thale cress | nucleus | 21.73 | 22.19 |
| Bra004174.1-P | Field mustard | nucleus | 23.21 | 22.1 |
| Bra004402.1-P | Field mustard | nucleus | 20.83 | 22.08 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 21.13 | 21.98 |
| AT1G66610.1 | Thale cress | nucleus | 23.81 | 21.86 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.61 | 21.79 |
| CDY01695 | Canola | nucleus | 19.94 | 21.68 |
| Bra004176.1-P | Field mustard | nucleus | 21.13 | 21.07 |
| CDY70665 | Canola | nucleus | 20.24 | 20.99 |
| Solyc03g042520.1.1 | Tomato | nucleus | 19.05 | 20.65 |
| CDX96138 | Canola | nucleus | 20.83 | 20.59 |
| Bra019710.1-P | Field mustard | nucleus | 20.83 | 20.47 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 20.54 | 20.29 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 21.13 | 20.17 |
| CDY36211 | Canola | nucleus | 21.43 | 19.94 |
| AT5G62800.1 | Thale cress | nucleus | 20.54 | 19.83 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 17.56 | 19.6 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 11.61 | 19.4 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 14.29 | 19.05 |
| AT1G66660.2 | Thale cress | nucleus | 19.64 | 18.97 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 16.96 | 18.94 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 17.26 | 17.85 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 17.86 | 17.6 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 19.35 | 17.33 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 19.64 | 17.28 |
| CDY01757 | Canola | cytosol | 2.68 | 16.98 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 18.15 | 16.71 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 21.73 | 15.9 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.5 | 14.74 |
| CDY01758 | Canola | cytosol | 15.18 | 11.67 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF32 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS4D01G356400 | EnsemblPlants:TraesCS4D01G356400.2 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | TIGR:cd16571 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4D:-:505352690..505354773
Molecular Weight (calculated)
36414.2 Da
IEP (calculated)
5.990
GRAVY (calculated)
-0.104
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKFSFADAD ADEDPPPAAA AGSEKRKREG GPAPEDGAAG GGPPPKARRL EVVGGEREER AVAGCGREVG RVGAGGDGDA AGISMRIDPD LLDCSICFEP
101: LCPPLYQLVL CIFQCQNGHV ACLSCWSRLS NKCHVCSHDA IFARNIALEK IVESIKSSCA YAKWGCCELV SYTQRNTHEE TCLFAPSTCP IPGCGYRGFT
201: GRWSGHFLVD HHSADFLHFV YGQPFEVNLE ASLPFLVLLG EDDHLFLLLN KNMTPFGHAF SVVCLRTGDL NWKFSYEIEA ASTRNPENCL QLKASVTNAK
301: EWAGLRPTKA FLLVPYDFCS STNLTLNLSI GRSASV
101: LCPPLYQLVL CIFQCQNGHV ACLSCWSRLS NKCHVCSHDA IFARNIALEK IVESIKSSCA YAKWGCCELV SYTQRNTHEE TCLFAPSTCP IPGCGYRGFT
201: GRWSGHFLVD HHSADFLHFV YGQPFEVNLE ASLPFLVLLG EDDHLFLLLN KNMTPFGHAF SVVCLRTGDL NWKFSYEIEA ASTRNPENCL QLKASVTNAK
301: EWAGLRPTKA FLLVPYDFCS STNLTLNLSI GRSASV
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.