Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01757 | Canola | cytosol | 10.86 | 64.15 |
| Bra022858.1-P | Field mustard | nucleus | 58.79 | 60.53 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 56.55 | 60.2 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 56.87 | 59.93 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 50.48 | 58.74 |
| Bra004402.1-P | Field mustard | nucleus | 57.83 | 57.1 |
| AT1G66610.1 | Thale cress | nucleus | 61.02 | 52.19 |
| AT1G66630.1 | Thale cress | cytosol | 49.84 | 51.49 |
| AT5G37910.1 | Thale cress | nucleus | 41.53 | 47.1 |
| AT5G37890.1 | Thale cress | nucleus | 40.58 | 44.41 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 12.78 | 43.96 |
| AT5G37870.1 | Thale cress | nucleus | 38.98 | 43.42 |
| AT5G37900.1 | Thale cress | nucleus | 32.59 | 42.32 |
| AT5G37930.1 | Thale cress | nucleus | 37.38 | 33.52 |
| AT1G66650.1 | Thale cress | nucleus | 33.55 | 31.91 |
| AT1G66660.2 | Thale cress | nucleus | 35.14 | 31.61 |
| AT5G62800.1 | Thale cress | nucleus | 35.14 | 31.61 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.04 | 31.22 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 20.45 | 29.91 |
| KRH42263 | Soybean | nucleus | 28.43 | 27.81 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 24.28 | 27.74 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 24.92 | 27.66 |
| KRH58384 | Soybean | nucleus | 28.11 | 27.5 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 17.57 | 27.5 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 22.04 | 27.38 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.97 | 27.17 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 23.0 | 27.07 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 24.28 | 26.95 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 22.68 | 26.69 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 23.64 | 26.62 |
| KXG32009 | Sorghum | nucleus | 24.92 | 26.35 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 23.0 | 26.18 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 23.0 | 26.18 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 23.0 | 25.62 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 22.36 | 25.55 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 23.0 | 25.53 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 24.92 | 25.41 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 21.73 | 25.37 |
| PGSC0003DMT400043050 | Potato | nucleus | 30.67 | 25.2 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 22.04 | 25.18 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 22.04 | 25.18 |
| KXG37941 | Sorghum | cytosol | 22.36 | 25.0 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 22.68 | 25.0 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 23.32 | 24.91 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 21.73 | 24.82 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 23.64 | 24.75 |
| Solyc03g034460.2.1 | Tomato | nucleus | 28.43 | 24.72 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 21.73 | 24.55 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 21.09 | 24.54 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 20.77 | 24.53 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 22.68 | 24.48 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 22.04 | 24.47 |
| Solyc03g042550.1.1 | Tomato | nucleus | 28.11 | 24.44 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 21.41 | 24.36 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 22.68 | 24.32 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 23.0 | 24.0 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 20.45 | 23.79 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 24.92 | 23.57 |
| Solyc03g042520.1.1 | Tomato | nucleus | 23.32 | 23.55 |
| Solyc03g034450.2.1 | Tomato | nucleus | 29.39 | 23.47 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 20.77 | 23.21 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 24.28 | 23.17 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 22.04 | 23.0 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 21.41 | 22.95 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 24.6 | 22.92 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 25.56 | 22.73 |
| Zm00001d041049_P001 | Maize | nucleus | 23.64 | 22.63 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 18.21 | 22.53 |
| OQU78944 | Sorghum | nucleus | 23.32 | 22.39 |
| KXG32014 | Sorghum | nucleus | 15.65 | 22.27 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 22.36 | 22.22 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 20.77 | 21.89 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 23.64 | 21.83 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 20.45 | 21.55 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 22.68 | 21.39 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 20.13 | 21.21 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 22.68 | 21.19 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 20.77 | 21.17 |
| TraesCSU01G045900.1 | Wheat | cytosol | 20.13 | 21.07 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.61 | 21.05 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 18.85 | 21.0 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 20.13 | 20.93 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 19.49 | 20.89 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 23.64 | 20.67 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 21.41 | 20.49 |
| EES00387 | Sorghum | nucleus | 20.77 | 20.38 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 18.21 | 20.36 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 21.09 | 20.0 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 21.73 | 20.0 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 21.41 | 19.71 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 21.41 | 19.71 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.46 | 19.5 |
| AT2G41980.1 | Thale cress | nucleus | 18.85 | 19.34 |
| OQU77422 | Sorghum | cytosol | 17.57 | 19.23 |
| AT3G58040.3 | Thale cress | cytosol | 18.53 | 18.83 |
| EES17731 | Sorghum | nucleus | 20.45 | 18.5 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 20.77 | 18.36 |
| AT4G27880.1 | Thale cress | nucleus | 18.85 | 18.04 |
| KXG21322 | Sorghum | nucleus | 21.41 | 17.91 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 21.73 | 17.8 |
| TraesCS1A01G070000.1 | Wheat | plastid | 13.74 | 17.7 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 18.85 | 17.3 |
| OQU86453 | Sorghum | cytosol | 11.82 | 17.29 |
| OQU77425 | Sorghum | nucleus | 20.77 | 17.29 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 22.36 | 17.28 |
| AT3G61790.1 | Thale cress | nucleus | 17.89 | 17.18 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 24.92 | 17.11 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 20.13 | 16.8 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 20.13 | 16.8 |
| AT5G53360.1 | Thale cress | plasma membrane | 12.46 | 16.74 |
| HORVU2Hr1G118840.1 | Barley | plastid | 19.81 | 16.71 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 19.81 | 16.62 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 24.28 | 16.56 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 24.28 | 16.38 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 18.85 | 16.16 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 18.85 | 16.16 |
| TraesCSU01G021700.1 | Wheat | nucleus | 18.85 | 16.16 |
| EES17735 | Sorghum | mitochondrion | 22.04 | 15.37 |
| TraesCSU01G231400.1 | Wheat | nucleus | 16.93 | 15.32 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.78 | 14.04 |
| EES02574 | Sorghum | nucleus | 16.93 | 11.83 |
| AT3G13672.2 | Thale cress | nucleus | 7.99 | 10.29 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.6 | 5.05 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:842980 | ProteinID:AAG51178.1 | ProteinID:AEE34537.1 |
| ArrayExpress:AT1G66620 | EnsemblPlantsGene:AT1G66620 | RefSeq:AT1G66620 | TAIR:AT1G66620 | RefSeq:AT1G66620-TAIR-G | EnsemblPlants:AT1G66620.1 |
| TAIR:AT1G66620.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | RefSeq:NP_176835.1 | PFAM:PF03145 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | UniProt:Q9C6H3 | InterPro:SINA-like |
| SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI00000A022A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
Coordinates
chr1:-:24852509..24854153
Molecular Weight (calculated)
35279.5 Da
IEP (calculated)
4.291
GRAVY (calculated)
-0.466
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.