Factsheet for AT5G53360.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G27880.1	Thale cress	nucleus	84.12	59.94
AT3G61790.1	Thale cress	nucleus	81.97	58.59
AT2G41980.1	Thale cress	nucleus	71.24	54.43
AT3G58040.3	Thale cress	cytosol	71.67	54.22
AT3G13672.2	Thale cress	nucleus	42.06	40.33
AT5G37870.1	Thale cress	nucleus	19.74	16.37
AT5G37910.1	Thale cress	nucleus	18.45	15.58
AT5G37890.1	Thale cress	nucleus	18.03	14.69
AT5G37900.1	Thale cress	nucleus	15.02	14.52
AT1G66630.1	Thale cress	cytosol	17.6	13.53
AT1G66650.1	Thale cress	nucleus	18.88	13.37
AT5G62800.1	Thale cress	nucleus	18.88	12.64
AT1G66620.1	Thale cress	nucleus	16.74	12.46
AT5G37930.1	Thale cress	nucleus	18.45	12.32
AT1G66660.2	Thale cress	nucleus	17.6	11.78
AT1G66610.1	Thale cress	nucleus	17.6	11.2

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:835417	ProteinID:AED96344.1
EMBL:AK117423	ProteinID:ANM69124.1	ArrayExpress:AT5G53360	EnsemblPlantsGene:AT5G53360	RefSeq:AT5G53360	TAIR:AT5G53360
RefSeq:AT5G53360-TAIR-G	EnsemblPlants:AT5G53360.1	TAIR:AT5G53360.1	EMBL:BT005507	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	RefSeq:NP_001330825.1	RefSeq:NP_200148.2
PFAM:PF03145	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42
InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000000C686	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

TRAF-like superfamily protein [Source:TAIR;Acc:AT5G53360]

Coordinates

chr5:+:21647823..21649567

Molecular Weight (calculated)

26710.9 Da

IEP (calculated)

7.141

GRAVY (calculated)

-0.357

Length

233 amino acids

Sequence
(BLAST)

001: MDILYVQPVN QECIIALEKV AESLELPCKY YNLGCLGIFP YYSKLKHESQ CNFRPYSCPY AGSECAAVGD ITFLVAHLRD DHKVDMHTGC TFNHRYVKSN
101: PREVENATWM LTVFQCFGQY FCLHFEAFQL GMAPVYMAFL RFMGDEDDAR NYTYSLEVGG SGRKQTWEGT PRSVRDSHRK VRDSHDGLII QRNMALFFSG
201: GDKKELKLRV TGRIWKEQQN PDSGVCITSM CSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.