Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT5G37910.1 | Thale cress | nucleus | 60.14 | 62.32 |
AT5G37870.1 | Thale cress | nucleus | 54.55 | 55.52 |
AT5G37900.1 | Thale cress | nucleus | 45.8 | 54.36 |
HORVU3Hr1G005260.1 | Barley | cytosol | 13.29 | 41.76 |
AT1G66620.1 | Thale cress | nucleus | 44.41 | 40.58 |
AT5G62800.1 | Thale cress | nucleus | 43.36 | 35.63 |
AT1G66630.1 | Thale cress | cytosol | 34.97 | 33.0 |
AT1G66610.1 | Thale cress | nucleus | 41.96 | 32.79 |
AT5G37930.1 | Thale cress | nucleus | 39.86 | 32.66 |
AT1G66650.1 | Thale cress | nucleus | 37.06 | 32.22 |
KRH42263 | Soybean | nucleus | 34.62 | 30.94 |
KRH58384 | Soybean | nucleus | 33.92 | 30.31 |
AT1G66660.2 | Thale cress | nucleus | 35.31 | 29.02 |
VIT_14s0006g01870.t01 | Wine grape | cytosol | 20.28 | 29.0 |
Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.03 | 28.51 |
TraesCS3D01G028800.1 | Wheat | nucleus | 20.98 | 28.04 |
HORVU3Hr1G004860.1 | Barley | cytosol | 24.13 | 27.38 |
KXG32008 | Sorghum | cytosol, nucleus, plastid | 24.48 | 26.32 |
TraesCS3D01G504900.1 | Wheat | nucleus | 24.83 | 25.91 |
HORVU4Hr1G056260.1 | Barley | nucleus | 24.83 | 25.82 |
KXG32009 | Sorghum | nucleus | 26.57 | 25.68 |
TraesCS3A01G031100.1 | Wheat | cytosol | 23.78 | 25.28 |
TraesCS3D01G031300.1 | Wheat | nucleus | 24.13 | 25.18 |
HORVU3Hr1G004950.1 | Barley | nucleus | 26.22 | 25.0 |
TraesCS3A01G030800.1 | Wheat | cytosol | 23.78 | 24.73 |
TraesCS3B01G560800.1 | Wheat | nucleus | 23.78 | 24.46 |
TraesCS3B01G053500.1 | Wheat | cytosol | 23.78 | 24.11 |
TraesCS3A01G048300.1 | Wheat | nucleus | 23.08 | 24.09 |
KXG37942 | Sorghum | cytosol, nucleus, plastid | 22.38 | 24.06 |
TraesCS3A01G031200.1 | Wheat | cytosol | 22.38 | 23.88 |
TraesCS3B01G033800.1 | Wheat | nucleus | 22.73 | 23.72 |
TraesCS3B01G050100.1 | Wheat | cytosol | 22.73 | 23.72 |
TraesCS3D01G029000.1 | Wheat | cytosol | 23.08 | 23.4 |
PGSC0003DMT400043047 | Potato | cytosol | 15.04 | 23.37 |
TraesCS3B01G031200.1 | Wheat | nucleus | 23.78 | 23.29 |
TraesCS3B01G053000.1 | Wheat | cytosol | 22.73 | 23.13 |
TraesCS3B01G050700.1 | Wheat | nucleus | 24.83 | 23.13 |
TraesCS3A01G030600.1 | Wheat | nucleus | 22.73 | 23.05 |
TraesCS3B01G052800.1 | Wheat | cytosol | 22.73 | 23.05 |
HORVU3Hr1G005320.1 | Barley | nucleus | 21.33 | 23.02 |
TraesCS3B01G032100.1 | Wheat | cytosol | 22.73 | 22.89 |
TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 23.43 | 22.87 |
Solyc03g042550.1.1 | Tomato | nucleus | 28.67 | 22.78 |
TraesCS3D01G030300.1 | Wheat | nucleus | 23.78 | 22.74 |
TraesCS3A01G062700.1 | Wheat | nucleus | 21.68 | 22.55 |
Solyc03g034460.2.1 | Tomato | nucleus | 28.32 | 22.5 |
TraesCS3B01G074800.1 | Wheat | cytosol | 21.68 | 22.38 |
TraesCS1A01G060800.1 | Wheat | nucleus | 23.78 | 22.15 |
TraesCS3B01G052700.1 | Wheat | nucleus | 19.58 | 22.13 |
TraesCS4B01G363200.1 | Wheat | nucleus | 25.17 | 21.95 |
HORVU3Hr1G004890.1 | Barley | nucleus | 22.73 | 21.67 |
TraesCS3B01G054400.1 | Wheat | cytosol | 22.38 | 21.55 |
PGSC0003DMT400043050 | Potato | nucleus | 28.67 | 21.52 |
TraesCS5A01G531400.2 | Wheat | nucleus | 24.83 | 21.45 |
HORVU2Hr1G118560.2 | Barley | nucleus | 20.98 | 21.43 |
KXG32014 | Sorghum | nucleus | 16.43 | 21.36 |
TraesCS3D01G015600.1 | Wheat | cytosol | 22.03 | 21.21 |
TraesCS3B01G052400.1 | Wheat | nucleus | 25.17 | 21.18 |
TraesCS4D01G356400.2 | Wheat | nucleus | 24.83 | 21.13 |
KXG37941 | Sorghum | cytosol | 20.63 | 21.07 |
TraesCS3A01G062800.1 | Wheat | nucleus | 21.33 | 21.03 |
TraesCS3B01G028900.1 | Wheat | cytosol | 22.03 | 20.93 |
TraesCS3A01G032200.1 | Wheat | nucleus | 24.83 | 20.88 |
TraesCSU01G045900.1 | Wheat | cytosol | 21.68 | 20.74 |
Solyc03g034450.2.1 | Tomato | nucleus | 28.32 | 20.66 |
AT2G41980.1 | Thale cress | nucleus | 22.03 | 20.66 |
TraesCS3B01G050200.1 | Wheat | nucleus | 17.83 | 20.65 |
Solyc03g042520.1.1 | Tomato | nucleus | 22.38 | 20.65 |
TraesCS5A01G228300.1 | Wheat | cytosol | 22.73 | 20.63 |
TraesCS3D01G029300.1 | Wheat | nucleus | 24.48 | 20.59 |
TraesCS3B01G033700.1 | Wheat | nucleus | 20.98 | 20.55 |
TraesCS3A01G030100.1 | Wheat | nucleus | 21.33 | 20.54 |
Zm00001d041049_P001 | Maize | nucleus | 23.43 | 20.49 |
AT3G58040.3 | Thale cress | cytosol | 22.03 | 20.45 |
TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 19.23 | 20.45 |
OQU78944 | Sorghum | nucleus | 23.08 | 20.25 |
HORVU3Hr1G004880.2 | Barley | nucleus | 23.78 | 20.06 |
AT3G61790.1 | Thale cress | nucleus | 22.73 | 19.94 |
OQU77422 | Sorghum | cytosol | 19.93 | 19.93 |
AT4G27880.1 | Thale cress | nucleus | 22.73 | 19.88 |
TraesCS3D01G029600.1 | Wheat | nucleus | 23.08 | 19.7 |
HORVU4Hr1G087120.3 | Barley | nucleus | 24.48 | 19.55 |
TraesCS3B01G050900.1 | Wheat | cytosol | 19.93 | 19.52 |
EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 22.03 | 19.27 |
TraesCS3A01G031300.1 | Wheat | cytosol | 18.88 | 19.22 |
OQU86453 | Sorghum | cytosol | 14.34 | 19.16 |
EES00387 | Sorghum | nucleus | 21.33 | 19.12 |
TraesCS1D01G061700.1 | Wheat | nucleus | 23.43 | 19.03 |
HORVU1Hr1G012490.3 | Barley | nucleus | 22.03 | 18.98 |
HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 18.53 | 18.93 |
AT5G53360.1 | Thale cress | plasma membrane | 14.69 | 18.03 |
TraesCS3B01G032300.1 | Wheat | cytosol | 12.59 | 18.0 |
TraesCSU01G021700.1 | Wheat | nucleus | 22.73 | 17.81 |
EES17731 | Sorghum | nucleus | 21.33 | 17.63 |
TraesCS2A01G586400.1 | Wheat | nucleus | 22.38 | 17.53 |
TraesCS2D01G600200.1 | Wheat | nucleus | 22.38 | 17.53 |
TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 22.03 | 16.8 |
TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 22.03 | 16.8 |
TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 21.68 | 16.62 |
OQU77414 | Sorghum | mitochondrion, nucleus | 20.28 | 16.38 |
HORVU3Hr1G005270.1 | Barley | nucleus | 19.23 | 16.13 |
KXG21322 | Sorghum | nucleus | 20.98 | 16.04 |
HORVU2Hr1G118840.1 | Barley | plastid | 20.63 | 15.9 |
TraesCS1D01G102900.1 | Wheat | nucleus | 20.98 | 15.71 |
OQU77425 | Sorghum | nucleus | 20.28 | 15.43 |
TraesCSU01G231400.1 | Wheat | nucleus | 18.53 | 15.32 |
TraesCS3A01G032100.1 | Wheat | nucleus | 24.13 | 15.13 |
TraesCS3D01G029400.1 | Wheat | nucleus | 23.78 | 14.81 |
HORVU0Hr1G006130.1 | Barley | nucleus | 16.78 | 14.55 |
TraesCS1A01G070000.1 | Wheat | plastid | 12.24 | 14.4 |
TraesCS3B01G052300.1 | Wheat | nucleus | 23.08 | 14.22 |
EES17735 | Sorghum | mitochondrion | 21.68 | 13.81 |
TraesCS3B01G031100.1 | Wheat | nucleus | 18.53 | 13.09 |
AT3G13672.2 | Thale cress | nucleus | 10.84 | 12.76 |
EES02574 | Sorghum | nucleus | 19.93 | 12.72 |
TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.59 | 12.63 |
Os05t0152700-00 | Rice | cytosol, extracellular | 0.7 | 2.02 |
Protein Annotations
MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:833768 | UniProt:A0A178UNQ6 | ProteinID:AED94244.1 |
ArrayExpress:AT5G37890 | EnsemblPlantsGene:AT5G37890 | RefSeq:AT5G37890 | TAIR:AT5G37890 | RefSeq:AT5G37890-TAIR-G | EnsemblPlants:AT5G37890.1 |
TAIR:AT5G37890.1 | EMBL:AY072436 | EMBL:AY114722 | ProteinID:BAB09035.1 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
GO:GO:0009056 | GO:GO:0009411 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 |
InterPro:IPR013083 | RefSeq:NP_198605.2 | ProteinID:OAO95666.1 | PFAM:PF03145 | PO:PO:0000013 | PO:PO:0000037 |
PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 |
PANTHER:PTHR10315:SF43 | UniProt:Q9FKD7 | InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like |
UniParc:UPI00000AB6D1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : |
Description
E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
Coordinates
chr5:-:15089678..15091955
Molecular Weight (calculated)
32053.9 Da
IEP (calculated)
7.957
GRAVY (calculated)
-0.148
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.