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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G37910.1 Thale cress nucleus 60.14 62.32
AT5G37870.1 Thale cress nucleus 54.55 55.52
AT5G37900.1 Thale cress nucleus 45.8 54.36
HORVU3Hr1G005260.1 Barley cytosol 13.29 41.76
AT1G66620.1 Thale cress nucleus 44.41 40.58
AT5G62800.1 Thale cress nucleus 43.36 35.63
AT1G66630.1 Thale cress cytosol 34.97 33.0
AT1G66610.1 Thale cress nucleus 41.96 32.79
AT5G37930.1 Thale cress nucleus 39.86 32.66
AT1G66650.1 Thale cress nucleus 37.06 32.22
KRH42263 Soybean nucleus 34.62 30.94
KRH58384 Soybean nucleus 33.92 30.31
AT1G66660.2 Thale cress nucleus 35.31 29.02
VIT_14s0006g01870.t01 Wine grape cytosol 20.28 29.0
Solyc03g036460.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 22.03 28.51
TraesCS3D01G028800.1 Wheat nucleus 20.98 28.04
HORVU3Hr1G004860.1 Barley cytosol 24.13 27.38
KXG32008 Sorghum cytosol, nucleus, plastid 24.48 26.32
TraesCS3D01G504900.1 Wheat nucleus 24.83 25.91
HORVU4Hr1G056260.1 Barley nucleus 24.83 25.82
KXG32009 Sorghum nucleus 26.57 25.68
TraesCS3A01G031100.1 Wheat cytosol 23.78 25.28
TraesCS3D01G031300.1 Wheat nucleus 24.13 25.18
HORVU3Hr1G004950.1 Barley nucleus 26.22 25.0
TraesCS3A01G030800.1 Wheat cytosol 23.78 24.73
TraesCS3B01G560800.1 Wheat nucleus 23.78 24.46
TraesCS3B01G053500.1 Wheat cytosol 23.78 24.11
TraesCS3A01G048300.1 Wheat nucleus 23.08 24.09
KXG37942 Sorghum cytosol, nucleus, plastid 22.38 24.06
TraesCS3A01G031200.1 Wheat cytosol 22.38 23.88
TraesCS3B01G033800.1 Wheat nucleus 22.73 23.72
TraesCS3B01G050100.1 Wheat cytosol 22.73 23.72
TraesCS3D01G029000.1 Wheat cytosol 23.08 23.4
PGSC0003DMT400043047 Potato cytosol 15.04 23.37
TraesCS3B01G031200.1 Wheat nucleus 23.78 23.29
TraesCS3B01G053000.1 Wheat cytosol 22.73 23.13
TraesCS3B01G050700.1 Wheat nucleus 24.83 23.13
TraesCS3A01G030600.1 Wheat nucleus 22.73 23.05
TraesCS3B01G052800.1 Wheat cytosol 22.73 23.05
HORVU3Hr1G005320.1 Barley nucleus 21.33 23.02
TraesCS3B01G032100.1 Wheat cytosol 22.73 22.89
TraesCS3B01G053400.1 Wheat cytosol, nucleus, plastid 23.43 22.87
Solyc03g042550.1.1 Tomato nucleus 28.67 22.78
TraesCS3D01G030300.1 Wheat nucleus 23.78 22.74
TraesCS3A01G062700.1 Wheat nucleus 21.68 22.55
Solyc03g034460.2.1 Tomato nucleus 28.32 22.5
TraesCS3B01G074800.1 Wheat cytosol 21.68 22.38
TraesCS1A01G060800.1 Wheat nucleus 23.78 22.15
TraesCS3B01G052700.1 Wheat nucleus 19.58 22.13
TraesCS4B01G363200.1 Wheat nucleus 25.17 21.95
HORVU3Hr1G004890.1 Barley nucleus 22.73 21.67
TraesCS3B01G054400.1 Wheat cytosol 22.38 21.55
PGSC0003DMT400043050 Potato nucleus 28.67 21.52
TraesCS5A01G531400.2 Wheat nucleus 24.83 21.45
HORVU2Hr1G118560.2 Barley nucleus 20.98 21.43
KXG32014 Sorghum nucleus 16.43 21.36
TraesCS3D01G015600.1 Wheat cytosol 22.03 21.21
TraesCS3B01G052400.1 Wheat nucleus 25.17 21.18
TraesCS4D01G356400.2 Wheat nucleus 24.83 21.13
KXG37941 Sorghum cytosol 20.63 21.07
TraesCS3A01G062800.1 Wheat nucleus 21.33 21.03
TraesCS3B01G028900.1 Wheat cytosol 22.03 20.93
TraesCS3A01G032200.1 Wheat nucleus 24.83 20.88
TraesCSU01G045900.1 Wheat cytosol 21.68 20.74
Solyc03g034450.2.1 Tomato nucleus 28.32 20.66
AT2G41980.1 Thale cress nucleus 22.03 20.66
TraesCS3B01G050200.1 Wheat nucleus 17.83 20.65
Solyc03g042520.1.1 Tomato nucleus 22.38 20.65
TraesCS5A01G228300.1 Wheat cytosol 22.73 20.63
TraesCS3D01G029300.1 Wheat nucleus 24.48 20.59
TraesCS3B01G033700.1 Wheat nucleus 20.98 20.55
TraesCS3A01G030100.1 Wheat nucleus 21.33 20.54
Zm00001d041049_P001 Maize nucleus 23.43 20.49
AT3G58040.3 Thale cress cytosol 22.03 20.45
TraesCS2A01G446400.1 Wheat cytosol, nucleus, plastid 19.23 20.45
OQU78944 Sorghum nucleus 23.08 20.25
HORVU3Hr1G004880.2 Barley nucleus 23.78 20.06
AT3G61790.1 Thale cress nucleus 22.73 19.94
OQU77422 Sorghum cytosol 19.93 19.93
AT4G27880.1 Thale cress nucleus 22.73 19.88
TraesCS3D01G029600.1 Wheat nucleus 23.08 19.7
HORVU4Hr1G087120.3 Barley nucleus 24.48 19.55
TraesCS3B01G050900.1 Wheat cytosol 19.93 19.52
EES17728 Sorghum cytosol, mitochondrion, nucleus 22.03 19.27
TraesCS3A01G031300.1 Wheat cytosol 18.88 19.22
OQU86453 Sorghum cytosol 14.34 19.16
EES00387 Sorghum nucleus 21.33 19.12
TraesCS1D01G061700.1 Wheat nucleus 23.43 19.03
HORVU1Hr1G012490.3 Barley nucleus 22.03 18.98
HORVU0Hr1G006120.2 Barley cytosol, nucleus, plastid 18.53 18.93
AT5G53360.1 Thale cress plasma membrane 14.69 18.03
TraesCS3B01G032300.1 Wheat cytosol 12.59 18.0
TraesCSU01G021700.1 Wheat nucleus 22.73 17.81
EES17731 Sorghum nucleus 21.33 17.63
TraesCS2A01G586400.1 Wheat nucleus 22.38 17.53
TraesCS2D01G600200.1 Wheat nucleus 22.38 17.53
TraesCS2B01G594500.1 Wheat nucleus, plastid 22.03 16.8
TraesCS2D01G564800.1 Wheat nucleus, plastid 22.03 16.8
TraesCS2A01G589200.1 Wheat nucleus, plastid 21.68 16.62
OQU77414 Sorghum mitochondrion, nucleus 20.28 16.38
HORVU3Hr1G005270.1 Barley nucleus 19.23 16.13
KXG21322 Sorghum nucleus 20.98 16.04
HORVU2Hr1G118840.1 Barley plastid 20.63 15.9
TraesCS1D01G102900.1 Wheat nucleus 20.98 15.71
OQU77425 Sorghum nucleus 20.28 15.43
TraesCSU01G231400.1 Wheat nucleus 18.53 15.32
TraesCS3A01G032100.1 Wheat nucleus 24.13 15.13
TraesCS3D01G029400.1 Wheat nucleus 23.78 14.81
HORVU0Hr1G006130.1 Barley nucleus 16.78 14.55
TraesCS1A01G070000.1 Wheat plastid 12.24 14.4
TraesCS3B01G052300.1 Wheat nucleus 23.08 14.22
EES17735 Sorghum mitochondrion 21.68 13.81
TraesCS3B01G031100.1 Wheat nucleus 18.53 13.09
AT3G13672.2 Thale cress nucleus 10.84 12.76
EES02574 Sorghum nucleus 19.93 12.72
TraesCS3D01G029700.1 Wheat cytosol, mitochondrion, nucleus 12.59 12.63
Os05t0152700-00 Rice cytosol, extracellular 0.7 2.02
Protein Annotations
MapMan:19.2.2.1.5.3.5Gene3D:3.30.40.10InterPro:7-in-absentia-prot_TRAF-domEntrezGene:833768UniProt:A0A178UNQ6ProteinID:AED94244.1
ArrayExpress:AT5G37890EnsemblPlantsGene:AT5G37890RefSeq:AT5G37890TAIR:AT5G37890RefSeq:AT5G37890-TAIR-GEnsemblPlants:AT5G37890.1
TAIR:AT5G37890.1EMBL:AY072436EMBL:AY114722ProteinID:BAB09035.1GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006464GO:GO:0006511GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008270
GO:GO:0009056GO:GO:0009411GO:GO:0009628GO:GO:0009987GO:GO:0016567GO:GO:0016740
GO:GO:0019538GO:GO:0046872GO:GO:0061630InterPro:IPR001841InterPro:IPR008974InterPro:IPR013010
InterPro:IPR013083RefSeq:NP_198605.2ProteinID:OAO95666.1PFAM:PF03145PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PFscan:PS50089PFscan:PS51081PANTHER:PTHR10315
PANTHER:PTHR10315:SF43UniProt:Q9FKD7InterPro:SINA-likeSUPFAM:SSF49599SUPFAM:SSF57850InterPro:TRAF-like
UniParc:UPI00000AB6D1InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDInterPro:Znf_SIAH::
Description
E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
Coordinates
chr5:-:15089678..15091955
Molecular Weight (calculated)
32053.9 Da
IEP (calculated)
7.957
GRAVY (calculated)
-0.148
Length
286 amino acids
Sequence
(BLAST)
001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.