Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G031300.1 | Wheat | nucleus | 86.51 | 79.56 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 86.11 | 79.2 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 85.32 | 78.47 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 84.92 | 78.1 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 19.05 | 52.75 |
| KXG32009 | Sorghum | nucleus | 42.86 | 36.49 |
| Os01t0761900-00 | Rice | cytosol | 23.41 | 36.2 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 38.49 | 35.27 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 34.52 | 32.83 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 36.11 | 30.33 |
| Os01t0125500-00 | Rice | mitochondrion | 32.94 | 29.54 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 38.89 | 28.91 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 34.13 | 28.67 |
| Bra025434.1-P | Field mustard | nucleus | 30.95 | 27.46 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 36.11 | 27.41 |
| CDY25763 | Canola | nucleus | 29.37 | 27.21 |
| CDY12498 | Canola | nucleus | 29.37 | 27.21 |
| Bra012354.1-P | Field mustard | cytosol | 28.97 | 26.84 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.41 | 26.7 |
| CDY11709 | Canola | nucleus | 17.46 | 26.67 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 21.03 | 26.5 |
| CDY52473 | Canola | nucleus | 29.37 | 26.06 |
| KRH42263 | Soybean | nucleus | 32.94 | 25.94 |
| KRH58384 | Soybean | nucleus | 32.94 | 25.94 |
| CDY36209 | Canola | plastid | 21.43 | 25.59 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 27.78 | 25.0 |
| AT5G37870.1 | Thale cress | nucleus | 27.38 | 24.56 |
| CDY01699 | Canola | nucleus, plastid | 27.38 | 24.47 |
| CDX99687 | Canola | nucleus | 27.38 | 24.38 |
| AT5G37910.1 | Thale cress | nucleus | 26.59 | 24.28 |
| AT5G37890.1 | Thale cress | nucleus | 27.38 | 24.13 |
| AT1G66630.1 | Thale cress | cytosol | 28.97 | 24.09 |
| PGSC0003DMT400043047 | Potato | cytosol | 17.46 | 23.91 |
| Bra000425.1-P | Field mustard | nucleus | 26.59 | 23.67 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 26.19 | 23.57 |
| CDY01695 | Canola | nucleus | 28.17 | 22.98 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 26.98 | 22.9 |
| Bra018266.1-P | Field mustard | plastid | 26.19 | 22.84 |
| CDY10787 | Canola | plastid | 26.19 | 22.84 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 26.59 | 22.79 |
| Bra022858.1-P | Field mustard | nucleus | 27.38 | 22.7 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 24.21 | 22.68 |
| AT1G66620.1 | Thale cress | nucleus | 27.38 | 22.04 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 30.16 | 21.23 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 27.78 | 21.21 |
| Bra004402.1-P | Field mustard | nucleus | 26.59 | 21.14 |
| AT1G66650.1 | Thale cress | nucleus | 27.38 | 20.97 |
| AT5G37900.1 | Thale cress | nucleus | 19.84 | 20.75 |
| Bra004174.1-P | Field mustard | nucleus | 28.97 | 20.68 |
| CDY70665 | Canola | nucleus | 26.59 | 20.68 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 14.68 | 20.67 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 28.57 | 20.63 |
| Solyc03g034460.2.1 | Tomato | nucleus | 29.37 | 20.56 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 16.67 | 20.19 |
| CDY47873 | Canola | nucleus | 25.79 | 20.06 |
| Bra028395.1-P | Field mustard | nucleus | 25.79 | 20.06 |
| Solyc03g042550.1.1 | Tomato | nucleus | 28.57 | 20.0 |
| PGSC0003DMT400043050 | Potato | nucleus | 29.76 | 19.68 |
| Solyc03g034450.2.1 | Tomato | nucleus | 30.56 | 19.64 |
| Bra019710.1-P | Field mustard | nucleus | 26.59 | 19.59 |
| AT5G62800.1 | Thale cress | nucleus | 26.98 | 19.54 |
| CDY27008 | Canola | nucleus | 25.4 | 19.45 |
| HORVU2Hr1G118840.1 | Barley | plastid | 28.17 | 19.14 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 25.79 | 19.06 |
| AT1G66610.1 | Thale cress | nucleus | 26.59 | 18.31 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 20.63 | 18.12 |
| AT1G66660.2 | Thale cress | nucleus | 25.0 | 18.1 |
| AT5G37930.1 | Thale cress | nucleus | 25.0 | 18.05 |
| Bra004176.1-P | Field mustard | nucleus | 23.81 | 17.8 |
| HORVU3Hr1G018420.2 | Barley | plastid | 22.22 | 17.67 |
| CDX96138 | Canola | nucleus | 23.41 | 17.35 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 19.44 | 17.19 |
| CDY36211 | Canola | nucleus | 24.6 | 17.17 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 21.03 | 17.04 |
| Solyc03g042520.1.1 | Tomato | nucleus | 20.63 | 16.77 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 19.84 | 15.29 |
| HORVU2Hr1G022590.1 | Barley | nucleus | 19.44 | 12.93 |
| HORVU1Hr1G033130.2 | Barley | plastid | 20.24 | 12.66 |
| CDY01757 | Canola | cytosol | 1.98 | 9.43 |
| CDY01758 | Canola | cytosol | 15.48 | 8.92 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU3Hr1G004860 | EnsemblPlants:HORVU3Hr1G004860.1 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M0VTD1 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF35 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000295DA43 | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | : | : | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:M0VTD1]
Coordinates
chrchr3H:-:12036245..12040349
Molecular Weight (calculated)
28148.6 Da
IEP (calculated)
7.063
GRAVY (calculated)
-0.279
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAERRNNEK SAASEGAIPL EVLDCAFCYH PLRPPVFQCR VGHVICSSCH HKLRKKDKCH VCSITGGYNR CIAFDHILES IKTSCSNSIY GCTVNTQYYK
101: QEDHEKACPH APCFCPEPGC GFVGSTTQLQ CHLTHDHMLP ATAFAYGYCF TLEMQEGMRV LHRKEEGGPL FLAKFTPVPP FGNAVSILCI DPHAMVGKHK
201: FECHVDIYSR TMGWNQHSNF QIISTDLSNG FPGEEASYTF IVPNISSNPH TT
101: QEDHEKACPH APCFCPEPGC GFVGSTTQLQ CHLTHDHMLP ATAFAYGYCF TLEMQEGMRV LHRKEEGGPL FLAKFTPVPP FGNAVSILCI DPHAMVGKHK
201: FECHVDIYSR TMGWNQHSNF QIISTDLSNG FPGEEASYTF IVPNISSNPH TT
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.