Factsheet for HORVU3Hr1G032110.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytoskeleton, nucleus

Predictor Summary:

nucleus 1
cytoskeleton 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, nucleus, plasma membrane
Any Predictor:	cytoskeleton, nucleus, plasma membrane
MultiLoc:	nucleus
WoLF PSORT:	cytoskeleton
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	96.94	97.54
TraesCS3B01G185000.1	Wheat	cytoskeleton, nucleus, plasma membrane	97.25	97.25
TraesCS3A01G158000.1	Wheat	cytosol, nucleus, plasma membrane	92.05	96.47
EES02178	Sorghum	cytosol, nucleus, peroxisome	84.71	90.23
HORVU7Hr1G082100.1	Barley	nucleus	77.06	87.8
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	89.6	84.44
HORVU1Hr1G033130.2	Barley	plastid	85.32	69.23
HORVU6Hr1G016120.2	Barley	nucleus	62.08	65.27
HORVU2Hr1G022590.1	Barley	nucleus	64.22	55.41
HORVU3Hr1G005260.1	Barley	cytosol	11.01	39.56
HORVU4Hr1G056260.1	Barley	nucleus	18.04	21.45
HORVU3Hr1G005320.1	Barley	nucleus	17.13	21.13
HORVU7Hr1G021160.2	Barley	cytosol	18.35	21.05
HORVU0Hr1G006120.2	Barley	cytosol, nucleus, plastid	17.43	20.36
HORVU3Hr1G004950.1	Barley	nucleus	18.65	20.33
HORVU3Hr1G018640.1	Barley	cytosol	12.84	20.19
HORVU3Hr1G004860.1	Barley	cytosol	15.29	19.84
HORVU2Hr1G118560.2	Barley	nucleus	16.21	18.93
HORVU3Hr1G004890.1	Barley	nucleus	16.82	18.33
HORVU3Hr1G018420.2	Barley	plastid	17.43	17.98
HORVU3Hr1G004880.2	Barley	nucleus	18.35	17.7
HORVU3Hr1G005270.1	Barley	nucleus	18.35	17.6
HORVU1Hr1G012490.3	Barley	nucleus	17.74	17.47
HORVU4Hr1G087120.3	Barley	nucleus	17.13	15.64
HORVU2Hr1G118840.1	Barley	plastid	16.51	14.56
HORVU0Hr1G006130.1	Barley	nucleus	14.37	14.24

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A287KNK8	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G032110
EnsemblPlants:HORVU3Hr1G032110.2	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000B469BA3	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287KNK8]

Coordinates

chrchr3H:-:162893264..162896873

Molecular Weight (calculated)

36316.4 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.259

Length

327 amino acids

Sequence
(BLAST)

001: MDVDSVECLS LPDAAMDADD VGLALHPHGA LVAASSRPAA YPKGGTAAGA GGVVAPGSSV HELLECPVCT NSMYPPIHQC QNGHTLCSTC KARVHNRCPT
101: CRQELGDIRC LALEKVAESL ELPCKYYSLG CPEIFPYYSK IKHEAMCSFR PYSCPYAGSE CSVTGDIPYL VNHLRDDHKV DMHSGCTFNH RYVKSNPREV
201: ENATWMLTVF HCFGQYFCLH FEAFQLGMAP VYMAFLRFMG DENEARNYSY SLEVGANGRK MVWEGTPRSV RDSHRKVRDS HDGLLIQRNM ALFFSGGDRK
301: ELKLRITGRI WKETQTPDGA CVPILCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.