Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G029600.1 | Wheat | nucleus | 87.02 | 88.06 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 14.16 | 52.75 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 51.03 | 52.11 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 45.13 | 51.0 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 45.13 | 51.0 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 28.91 | 38.89 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 30.38 | 38.87 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 28.61 | 35.27 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 25.66 | 31.07 |
| CDY11709 | Canola | nucleus | 15.04 | 30.91 |
| CDY36209 | Canola | plastid | 17.7 | 28.44 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.11 | 26.24 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.16 | 26.09 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 20.35 | 25.65 |
| CDY12498 | Canola | nucleus | 20.35 | 25.37 |
| CDY01699 | Canola | nucleus, plastid | 20.94 | 25.18 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.24 | 24.49 |
| AT1G66630.1 | Thale cress | cytosol | 21.83 | 24.42 |
| Bra000425.1-P | Field mustard | nucleus | 20.35 | 24.38 |
| Bra025434.1-P | Field mustard | nucleus | 20.35 | 24.3 |
| CDY52473 | Canola | nucleus | 20.35 | 24.3 |
| Bra012354.1-P | Field mustard | cytosol | 19.47 | 24.26 |
| CDY25763 | Canola | nucleus | 19.47 | 24.26 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 23.6 | 24.24 |
| Bra004174.1-P | Field mustard | nucleus | 25.07 | 24.08 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 24.78 | 24.07 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.68 | 24.02 |
| AT5G37870.1 | Thale cress | nucleus | 19.76 | 23.84 |
| AT5G37890.1 | Thale cress | nucleus | 20.06 | 23.78 |
| CDX99687 | Canola | nucleus | 19.76 | 23.67 |
| AT1G66620.1 | Thale cress | nucleus | 21.83 | 23.64 |
| CDY10787 | Canola | plastid | 19.76 | 23.18 |
| Bra018266.1-P | Field mustard | plastid | 19.76 | 23.18 |
| Bra022858.1-P | Field mustard | nucleus | 20.65 | 23.03 |
| KRH42263 | Soybean | nucleus | 21.53 | 22.81 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 19.17 | 22.81 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 19.76 | 22.56 |
| CDY47873 | Canola | nucleus | 21.53 | 22.53 |
| Bra028395.1-P | Field mustard | nucleus | 21.53 | 22.53 |
| Bra004402.1-P | Field mustard | nucleus | 20.94 | 22.4 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 12.98 | 22.0 |
| CDY27008 | Canola | nucleus | 21.24 | 21.88 |
| KRH58384 | Soybean | nucleus | 20.65 | 21.88 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 22.71 | 21.51 |
| AT5G62800.1 | Thale cress | nucleus | 21.83 | 21.26 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 17.99 | 21.25 |
| CDY70665 | Canola | nucleus | 20.06 | 20.99 |
| AT1G66610.1 | Thale cress | nucleus | 22.42 | 20.77 |
| AT1G66650.1 | Thale cress | nucleus | 20.06 | 20.67 |
| AT5G37910.1 | Thale cress | nucleus | 16.81 | 20.65 |
| Solyc03g034460.2.1 | Tomato | nucleus | 21.83 | 20.56 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 16.81 | 20.36 |
| AT5G37930.1 | Thale cress | nucleus | 20.94 | 20.34 |
| PGSC0003DMT400043050 | Potato | nucleus | 22.71 | 20.21 |
| Bra019710.1-P | Field mustard | nucleus | 20.35 | 20.18 |
| Solyc03g042550.1.1 | Tomato | nucleus | 21.24 | 20.0 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 18.29 | 19.94 |
| CDY01695 | Canola | nucleus | 17.99 | 19.74 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 19.76 | 19.65 |
| AT5G37900.1 | Thale cress | nucleus | 13.86 | 19.5 |
| AT1G66660.2 | Thale cress | nucleus | 19.76 | 19.25 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 11.8 | 19.23 |
| HORVU3Hr1G018420.2 | Barley | plastid | 17.7 | 18.93 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.83 | 18.88 |
| CDX96138 | Canola | nucleus | 18.88 | 18.82 |
| Bra004176.1-P | Field mustard | nucleus | 18.58 | 18.69 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 17.7 | 18.35 |
| CDY36211 | Canola | nucleus | 18.88 | 17.73 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.63 | 17.1 |
| HORVU2Hr1G118840.1 | Barley | plastid | 18.58 | 16.98 |
| HORVU2Hr1G022590.1 | Barley | nucleus | 18.58 | 16.62 |
| HORVU1Hr1G033130.2 | Barley | plastid | 18.58 | 15.63 |
| CDY01757 | Canola | cytosol | 2.36 | 15.09 |
| CDY01758 | Canola | cytosol | 14.16 | 10.98 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU3Hr1G004880 | EnsemblPlants:HORVU3Hr1G004880.2 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M0YQC5 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000296EB8E | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:M0YQC5]
Coordinates
chrchr3H:+:12203359..12206079
Molecular Weight (calculated)
37535.4 Da
IEP (calculated)
6.643
GRAVY (calculated)
-0.465
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRSSNKRQ LEAQREGDAN AKRHNVAMRL ETLDCYVCSE PLRPPIFQCS LGHFICLSCR SEILDKKCLL CSAVTSFERC FGMEHVVMSV TVACSNAKYG
101: CAEQISYYQK EEHEKVCPNA PCFCPESGCG FAGSTMALLG HMTGKHKCPL STCDDPSLVN AYLYLEPGLR VLHCHEDGQF FLFSMASEPF GHAISVVCVQ
201: PRVTEPKFTC DLYYDSSTNG DSQKSYCKIR SSSLSDGLPM GYDLIVPKGK VSDEGDGIML RATIRGKRKV LYDSDSDSDS DSDKAPSGRS KGRGPKSDYS
301: DANHERPIPL AARLIPDYSE SEDERPLAAR FSKIRGYER
101: CAEQISYYQK EEHEKVCPNA PCFCPESGCG FAGSTMALLG HMTGKHKCPL STCDDPSLVN AYLYLEPGLR VLHCHEDGQF FLFSMASEPF GHAISVVCVQ
201: PRVTEPKFTC DLYYDSSTNG DSQKSYCKIR SSSLSDGLPM GYDLIVPKGK VSDEGDGIML RATIRGKRKV LYDSDSDSDS DSDKAPSGRS KGRGPKSDYS
301: DANHERPIPL AARLIPDYSE SEDERPLAAR FSKIRGYER
001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.