Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01756 | Canola | cytosol, nucleus, plastid | 93.2 | 92.26 |
| Bra004402.1-P | Field mustard | nucleus | 97.62 | 90.54 |
| CDY01757 | Canola | cytosol | 11.56 | 64.15 |
| AT1G66620.1 | Thale cress | nucleus | 60.2 | 56.55 |
| CDY36209 | Canola | plastid | 36.39 | 50.71 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 55.78 | 46.99 |
| AT1G66610.1 | Thale cress | nucleus | 57.14 | 45.9 |
| CDY01699 | Canola | nucleus, plastid | 43.54 | 45.39 |
| CDX99687 | Canola | nucleus | 43.54 | 45.23 |
| CDY52473 | Canola | nucleus | 43.54 | 45.07 |
| CDY11709 | Canola | nucleus | 25.17 | 44.85 |
| CDY10787 | Canola | plastid | 41.84 | 42.56 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 25.51 | 41.9 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 12.93 | 41.76 |
| CDY01695 | Canola | nucleus | 37.07 | 35.28 |
| CDY12498 | Canola | nucleus | 31.97 | 34.56 |
| CDY25763 | Canola | nucleus | 31.97 | 34.56 |
| CDY47873 | Canola | nucleus | 35.03 | 31.79 |
| CDY27008 | Canola | nucleus | 35.03 | 31.31 |
| CDY70665 | Canola | nucleus | 33.67 | 30.56 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.09 | 28.05 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 20.41 | 28.04 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 25.85 | 27.74 |
| CDX96138 | Canola | nucleus | 31.97 | 27.65 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 25.51 | 27.27 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 25.85 | 26.95 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 22.79 | 26.59 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 24.83 | 26.26 |
| PGSC0003DMT400043047 | Potato | cytosol | 16.33 | 26.09 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 17.69 | 26.0 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 23.13 | 25.56 |
| KRH58384 | Soybean | nucleus | 27.55 | 25.31 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 22.79 | 25.28 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 23.47 | 25.09 |
| KRH42263 | Soybean | nucleus | 27.21 | 25.0 |
| CDY36211 | Canola | nucleus | 30.61 | 24.93 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 24.83 | 24.91 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 22.79 | 24.45 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 23.13 | 24.11 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 22.45 | 24.09 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 21.77 | 23.88 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 22.79 | 23.76 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 22.11 | 23.72 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 21.43 | 23.68 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 23.47 | 23.63 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 22.45 | 23.49 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 22.11 | 23.47 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 21.43 | 23.42 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 21.77 | 23.36 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 21.77 | 23.27 |
| PGSC0003DMT400043050 | Potato | nucleus | 29.93 | 23.1 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 23.47 | 23.08 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 22.11 | 23.05 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 23.81 | 22.8 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 21.77 | 22.54 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 22.11 | 22.41 |
| Solyc03g034460.2.1 | Tomato | nucleus | 27.21 | 22.22 |
| Solyc03g042550.1.1 | Tomato | nucleus | 27.21 | 22.22 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 24.83 | 22.05 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 22.45 | 22.0 |
| KXG32009 | Sorghum | nucleus | 22.11 | 21.96 |
| Solyc03g034450.2.1 | Tomato | nucleus | 29.25 | 21.94 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 21.77 | 21.92 |
| KXG32014 | Sorghum | nucleus | 16.33 | 21.82 |
| KXG37941 | Sorghum | cytosol | 20.75 | 21.79 |
| CDY01758 | Canola | cytosol | 32.31 | 21.74 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 21.43 | 21.58 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 19.73 | 21.56 |
| Zm00001d041049_P001 | Maize | nucleus | 23.81 | 21.41 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 18.37 | 21.34 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 23.81 | 21.34 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 22.79 | 21.27 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 24.49 | 21.24 |
| OQU78944 | Sorghum | nucleus | 23.47 | 21.17 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 24.15 | 21.13 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 20.07 | 21.07 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 17.69 | 21.05 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 21.43 | 20.52 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 20.75 | 20.33 |
| Solyc03g042520.1.1 | Tomato | nucleus | 21.43 | 20.32 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 23.13 | 20.3 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 24.15 | 20.17 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 22.11 | 19.58 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 19.39 | 19.19 |
| EES00387 | Sorghum | nucleus | 20.75 | 19.12 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 23.13 | 18.99 |
| OQU77422 | Sorghum | cytosol | 18.37 | 18.88 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 19.05 | 18.6 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 17.69 | 18.57 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 18.71 | 18.52 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 18.71 | 18.52 |
| TraesCSU01G045900.1 | Wheat | cytosol | 18.71 | 18.39 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 20.41 | 18.35 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 21.09 | 18.24 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 21.09 | 18.24 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.35 | 18.15 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.24 | 18.0 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 20.75 | 17.94 |
| CDY06889 | Canola | cytosol | 18.03 | 17.85 |
| CDX92848 | Canola | nucleus | 18.37 | 17.7 |
| CDY35390 | Canola | nucleus | 18.37 | 17.59 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 22.79 | 17.54 |
| CDY57244 | Canola | cytosol | 18.37 | 17.53 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 21.09 | 17.51 |
| CDY22549 | Canola | nucleus | 18.37 | 17.48 |
| CDX97399 | Canola | nucleus | 19.05 | 17.45 |
| CDX71977 | Canola | cytosol | 18.37 | 17.42 |
| CDX88968 | Canola | cytosol | 18.37 | 17.36 |
| CDY67927 | Canola | cytosol | 18.37 | 17.36 |
| EES17731 | Sorghum | nucleus | 20.41 | 17.34 |
| OQU86453 | Sorghum | cytosol | 12.59 | 17.29 |
| CDY67278 | Canola | cytosol | 4.76 | 17.28 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 19.39 | 17.27 |
| CDY14808 | Canola | cytosol | 17.69 | 17.22 |
| CDY14268 | Canola | nucleus | 18.71 | 17.19 |
| CDX89221 | Canola | nucleus | 18.37 | 16.77 |
| CDY19018 | Canola | nucleus | 18.37 | 16.77 |
| CDX67865 | Canola | nucleus | 18.37 | 16.72 |
| CDY25077 | Canola | nucleus | 18.37 | 16.72 |
| CDY43950 | Canola | nucleus | 18.37 | 16.62 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 21.09 | 16.53 |
| KXG21322 | Sorghum | nucleus | 20.75 | 16.31 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 20.75 | 16.27 |
| CDY56244 | Canola | cytosol | 15.99 | 16.26 |
| CDX89132 | Canola | cytosol | 18.03 | 16.26 |
| TraesCS1A01G070000.1 | Wheat | plastid | 13.27 | 16.05 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 20.07 | 15.82 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 21.43 | 15.56 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 18.03 | 15.54 |
| OQU77425 | Sorghum | nucleus | 19.73 | 15.43 |
| HORVU2Hr1G118840.1 | Barley | plastid | 19.39 | 15.36 |
| TraesCSU01G231400.1 | Wheat | nucleus | 18.03 | 15.32 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 24.15 | 15.3 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 23.47 | 15.13 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 23.47 | 15.03 |
| CDY06056 | Canola | cytosol | 13.27 | 14.89 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 18.37 | 14.79 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 18.37 | 14.79 |
| TraesCSU01G021700.1 | Wheat | nucleus | 18.37 | 14.79 |
| EES17735 | Sorghum | mitochondrion | 21.09 | 13.81 |
| CDX82523 | Canola | cytosol | 9.86 | 13.55 |
| CDX75727 | Canola | cytosol | 9.52 | 13.08 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.59 | 12.98 |
| CDY38819 | Canola | nucleus | 8.5 | 12.89 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 10.88 | 11.59 |
| EES02574 | Sorghum | nucleus | 17.01 | 11.16 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 8.16 | 10.86 |
| CDY64066 | Canola | cytosol | 3.74 | 10.19 |
| CDY67899 | Canola | cytosol, plastid | 4.42 | 7.83 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.68 | 2.02 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078E3G9 | EnsemblPlants:CDX95911 | ProteinID:CDX95911 | ProteinID:CDX95911.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00101918001 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniPathway:UPA00143 | UniParc:UPI0004EF1642 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : |
Description
BnaA07g28200D
Coordinates
chrLK031892:-:26230..28221
Molecular Weight (calculated)
33040.3 Da
IEP (calculated)
5.081
GRAVY (calculated)
-0.237
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MWNAEQVISG GASSSSYSVF GEETDTEAGD DEVTVTEEVR SGTLFELDLL DCPVCCHALT RPVFQCDNGH IACSSCCTNL RSKCPSCTLP IGVYRNRMME
101: RVVEAVIVPC PNAKHGCTEM FSYGKELVHE KECSFALCYC PRRGCNYAGL CKDLYRHYYN CSSAREYFRC GYNVQAWMHI RDKILVLQEG REGPLVAIQC
201: FEEEQGVYVT VNCIAPCVPG VSEFSFQLSY SSYGGADKTM SFGLGEMNRI QKVCFQTPDK DFMFVPHYFL AGRTSLKMNI CVRRRGGEEE EENT
101: RVVEAVIVPC PNAKHGCTEM FSYGKELVHE KECSFALCYC PRRGCNYAGL CKDLYRHYYN CSSAREYFRC GYNVQAWMHI RDKILVLQEG REGPLVAIQC
201: FEEEQGVYVT VNCIAPCVPG VSEFSFQLSY SSYGGADKTM SFGLGEMNRI QKVCFQTPDK DFMFVPHYFL AGRTSLKMNI CVRRRGGEEE EENT
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.