Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 31.66 | 37.97 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 31.03 | 37.36 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 33.23 | 36.55 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 28.84 | 34.59 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 26.96 | 33.99 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 33.54 | 33.97 |
| Os01t0125000-00 | Rice | nucleus | 35.42 | 33.33 |
| KXG37941 | Sorghum | cytosol | 28.53 | 32.5 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 28.53 | 32.38 |
| KXG32009 | Sorghum | nucleus | 28.53 | 30.74 |
| CDY11709 | Canola | nucleus | 15.05 | 29.09 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 24.76 | 28.21 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 26.65 | 25.76 |
| CDY12498 | Canola | nucleus | 21.94 | 25.74 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 26.02 | 25.38 |
| CDY25763 | Canola | nucleus | 21.32 | 25.0 |
| Bra012354.1-P | Field mustard | cytosol | 21.32 | 25.0 |
| AT5G37870.1 | Thale cress | nucleus | 21.94 | 24.91 |
| Bra000425.1-P | Field mustard | nucleus | 21.94 | 24.73 |
| CDY52473 | Canola | nucleus | 21.94 | 24.65 |
| CDX99687 | Canola | nucleus | 21.63 | 24.38 |
| Bra025434.1-P | Field mustard | nucleus | 21.63 | 24.3 |
| KXG32011 | Sorghum | cytosol | 18.18 | 23.87 |
| OQU77422 | Sorghum | cytosol | 21.32 | 23.78 |
| CDY36209 | Canola | plastid | 15.67 | 23.7 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 25.71 | 23.16 |
| Bra022858.1-P | Field mustard | nucleus | 21.94 | 23.03 |
| KXG32010 | Sorghum | extracellular | 17.55 | 22.86 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 28.84 | 22.72 |
| KRH42263 | Soybean | nucleus | 22.57 | 22.5 |
| Bra018266.1-P | Field mustard | plastid | 20.38 | 22.49 |
| CDY10787 | Canola | plastid | 20.38 | 22.49 |
| CDY01699 | Canola | nucleus, plastid | 19.75 | 22.34 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 18.81 | 22.3 |
| KRH58384 | Soybean | nucleus | 22.26 | 22.19 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.36 | 22.17 |
| AT5G37910.1 | Thale cress | nucleus | 19.12 | 22.1 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.23 | 21.79 |
| AT1G66630.1 | Thale cress | cytosol | 20.69 | 21.78 |
| CDY01695 | Canola | nucleus | 21.0 | 21.68 |
| AT5G37890.1 | Thale cress | nucleus | 19.12 | 21.33 |
| KXG21322 | Sorghum | nucleus | 24.76 | 21.12 |
| EES17731 | Sorghum | nucleus | 22.88 | 21.1 |
| OQU86460 | Sorghum | nucleus | 21.94 | 20.96 |
| AT1G66620.1 | Thale cress | nucleus | 20.38 | 20.77 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 19.12 | 20.75 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.91 | 20.65 |
| OQU77425 | Sorghum | nucleus | 24.14 | 20.48 |
| KXG32014 | Sorghum | nucleus | 13.79 | 20.0 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.5 | 19.87 |
| AT1G66650.1 | Thale cress | nucleus | 20.38 | 19.76 |
| CDY47873 | Canola | nucleus | 20.06 | 19.75 |
| AT5G37900.1 | Thale cress | nucleus | 14.73 | 19.5 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 21.32 | 19.48 |
| CDY27008 | Canola | nucleus | 20.06 | 19.45 |
| Bra028395.1-P | Field mustard | nucleus | 19.75 | 19.44 |
| OQU84285 | Sorghum | cytosol | 18.81 | 19.29 |
| Bra004176.1-P | Field mustard | nucleus | 20.38 | 19.29 |
| Bra004174.1-P | Field mustard | nucleus | 21.32 | 19.26 |
| Bra004402.1-P | Field mustard | nucleus | 19.12 | 19.24 |
| EER97677 | Sorghum | cytosol | 18.18 | 19.21 |
| AT1G66610.1 | Thale cress | nucleus | 21.94 | 19.13 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 11.91 | 19.0 |
| EER92255 | Sorghum | nucleus | 17.87 | 18.87 |
| CDY01757 | Canola | cytosol | 3.13 | 18.87 |
| CDY70665 | Canola | nucleus | 19.12 | 18.83 |
| CDX96138 | Canola | nucleus | 20.06 | 18.82 |
| OQU78944 | Sorghum | nucleus | 18.81 | 18.4 |
| AT5G37930.1 | Thale cress | nucleus | 20.06 | 18.34 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 17.55 | 18.24 |
| KXG32028 | Sorghum | plastid | 19.12 | 18.15 |
| Bra019710.1-P | Field mustard | nucleus | 19.44 | 18.13 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 15.05 | 18.05 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 18.18 | 17.79 |
| EES02573 | Sorghum | cytosol | 19.44 | 17.77 |
| OQU86453 | Sorghum | cytosol | 11.91 | 17.76 |
| KXG32085 | Sorghum | nucleus | 12.54 | 17.7 |
| CDY36211 | Canola | nucleus | 19.75 | 17.45 |
| AT5G62800.1 | Thale cress | nucleus | 18.81 | 17.24 |
| Solyc03g042550.1.1 | Tomato | nucleus | 19.44 | 17.22 |
| EES06707 | Sorghum | nucleus | 18.5 | 17.15 |
| Solyc03g034460.2.1 | Tomato | nucleus | 19.12 | 16.94 |
| PGSC0003DMT400043050 | Potato | nucleus | 19.75 | 16.54 |
| AT1G66660.2 | Thale cress | nucleus | 17.87 | 16.38 |
| EES17735 | Sorghum | mitochondrion | 22.88 | 16.26 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 17.87 | 16.15 |
| KXG32019 | Sorghum | nucleus, plastid | 18.5 | 15.86 |
| Solyc03g034450.2.1 | Tomato | nucleus | 19.44 | 15.82 |
| Solyc03g042520.1.1 | Tomato | nucleus | 13.79 | 14.19 |
| EES02574 | Sorghum | nucleus | 18.81 | 13.39 |
| KXG19745 | Sorghum | extracellular | 3.45 | 11.46 |
| CDY01758 | Canola | cytosol | 12.54 | 9.15 |
| KXG22272 | Sorghum | cytosol | 2.51 | 7.84 |
| KXG30435 | Sorghum | cytosol | 2.51 | 7.84 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:8079026 | UniProt:C5XE35 | EnsemblPlants:EES00387 |
| ProteinID:EES00387 | ProteinID:EES00387.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3003G089500 | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniParc:UPI0001A8480A | RefSeq:XP_002455267.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:+:7818220..7819743
Molecular Weight (calculated)
35093.2 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.402
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIESNADGS AGKRNGQVEQ EGEHVANAKR LKGSIEVEAF SCRVCAQLLS PPIFECSSVS WHFICSSCRD KLPADKNKCP LCSGAGGCDL ARSLGMERAA
101: RSILVDCRYA ERGCTVKTAF YEPRDSHEKV CPHAPSLCPE PGCGFAGRPE QLLDHLTGHH GWPSTKFDYP EAFDLRVDEP GAQVLCCKED GQLFLVNVKP
201: TARPPPAGRV VSLVGVPPYL KPTGFGCRVE FSCFLSHRGT MALDDIQPLR LSDWPPATEF LCVLPDISDK ENEASSVKPL EPTFRIMFVC ASSNEGERSW
301: HDTIYIESDE DDSDYEDDD
101: RSILVDCRYA ERGCTVKTAF YEPRDSHEKV CPHAPSLCPE PGCGFAGRPE QLLDHLTGHH GWPSTKFDYP EAFDLRVDEP GAQVLCCKED GQLFLVNVKP
201: TARPPPAGRV VSLVGVPPYL KPTGFGCRVE FSCFLSHRGT MALDDIQPLR LSDWPPATEF LCVLPDISDK ENEASSVKPL EPTFRIMFVC ASSNEGERSW
301: HDTIYIESDE DDSDYEDDD
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.