CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029203_P002	Maize	cytosol	97.68	97.68
Os03t0356414-01	Rice	cytosol	93.38	93.69
EER97677	Sorghum	cytosol	90.73	90.73
TraesCS4D01G164700.1	Wheat	nucleus	90.4	90.7
TraesCS4A01G148400.2	Wheat	nucleus	90.4	90.7
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	88.74	87.87
KRH13409	Soybean	cytosol	85.1	84.54
PGSC0003DMT400054414	Potato	cytosol	84.77	83.93
KXG19745	Sorghum	extracellular	24.5	77.08
GSMUA_Achr3P08700_001	Banana	cytosol	87.42	76.52
Solyc02g069880.2.1	Tomato	cytosol	49.67	74.26
KRH20763	Soybean	nucleus	85.76	74.21
EES02178	Sorghum	cytosol, nucleus, peroxisome	70.53	69.38
OQU84285	Sorghum	cytosol	65.89	63.99
EES06707	Sorghum	nucleus	72.19	63.37
KXG22272	Sorghum	cytosol	21.19	62.75
KXG30435	Sorghum	cytosol	21.19	62.75
EES19270	Sorghum	cytosol, nucleus, peroxisome	71.52	61.19
KXG32011	Sorghum	cytosol	20.86	25.93
KXG32010	Sorghum	extracellular	19.54	24.08
KXG32014	Sorghum	nucleus	16.89	23.18
KXG32008	Sorghum	cytosol, nucleus, plastid	19.87	22.56
KXG37942	Sorghum	cytosol, nucleus, plastid	18.87	21.43
KXG37941	Sorghum	cytosol	18.87	20.36
KXG32009	Sorghum	nucleus	19.54	19.93
OQU86439	Sorghum	cytosol, mitochondrion, plastid	17.22	19.55
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	20.86	19.33
EES00387	Sorghum	nucleus	18.87	17.87
OQU78944	Sorghum	nucleus	18.87	17.48
KXG32085	Sorghum	nucleus	12.91	17.26
KXG32019	Sorghum	nucleus, plastid	21.19	17.2
EES02573	Sorghum	cytosol	19.87	17.19
OQU77422	Sorghum	cytosol	16.23	17.13
OQU86460	Sorghum	nucleus	18.21	16.47
OQU86453	Sorghum	cytosol	11.59	16.36
EES17728	Sorghum	cytosol, mitochondrion, nucleus	17.55	16.21
OQU77414	Sorghum	mitochondrion, nucleus	18.87	16.1
KXG32028	Sorghum	plastid	17.55	15.77
EES17731	Sorghum	nucleus	16.89	14.74
KXG21322	Sorghum	nucleus	17.88	14.44
OQU77425	Sorghum	nucleus	16.23	13.03
EES17735	Sorghum	mitochondrion	16.89	11.36
EES02574	Sorghum	nucleus	15.89	10.71

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:8080816	UniProt:C5WZQ0
EnsemblPlants:EER92255	ProteinID:EER92255	ProteinID:EER92255.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006511	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009628	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	GO:GO:0080148	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	ProteinID:KXG39348.1	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3001G368300	SUPFAM:SSF49599	SUPFAM:SSF57850
unigene:Sbi.13	InterPro:TRAF-like	UniParc:UPI0001A820EA	RefSeq:XP_002465257.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:65718136..65721635

Molecular Weight (calculated)

34276.1 Da

IEP (calculated)

7.598

GRAVY (calculated)

-0.355

Length

302 amino acids

Sequence
(BLAST)

001: MMATTAYIDD SCSEVIDPPK TEVLDVVELP GDHTQHPPKP NVVVSSSVRE LLECPVCLSA MYPPIHQCSN GHTLCSGCKP RVHNRCPTCR HELGNIRCLA
101: LEKVAASLEV PCKYQSFGCS GIYPYYSKLK HESQCQYRPY SCPYAGSECT VVGDIPYLVN HLKDDHKVDM HNGCTFNHRY VKPNPHEVEN ATWMLTVFSC
201: FGQYFCLHFE AFQLGMSPVY IAFLRFMGDD AEAKNYSYSL EVGGTGRKMI WQGVPRSIRD SHRKVRDSYD GLIIQRNMAL FFSGGDRKEL KLRVTGRIWK
301: EQ

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.