CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	91.45	91.15
PGSC0003DMT400054414	Potato	cytosol	87.17	86.89
KRH20763	Soybean	nucleus	99.01	86.25
EER97677	Sorghum	cytosol	85.53	86.09
Os07t0659800-01	Rice	cytosol	85.53	86.09
Os03t0356414-01	Rice	cytosol	85.2	86.05
Zm00001d022401_P002	Maize	cytosol	84.87	85.43
Zm00001d029203_P002	Maize	cytosol	84.54	85.1
EER92255	Sorghum	nucleus	84.54	85.1
TraesCS4A01G148400.2	Wheat	nucleus	83.55	84.39
TraesCS4D01G164700.1	Wheat	nucleus	83.55	84.39
TraesCS2D01G131700.1	Wheat	cytosol	83.22	84.05
TraesCS2A01G129000.1	Wheat	plasma membrane	83.22	79.31
Solyc02g069880.2.1	Tomato	cytosol	50.99	76.73
GSMUA_Achr3P08700_001	Banana	cytosol	84.87	74.78
TraesCS2B01G151100.1	Wheat	plasma membrane	83.22	72.29
KRG97189	Soybean	nucleus	70.72	68.47
KRH64440	Soybean	cytosol	72.37	68.11
KRH53502	Soybean	cytosol	72.7	67.58
HORVU2Hr1G022590.1	Barley	nucleus	82.89	66.49
KRH68916	Soybean	nucleus	70.72	65.55
KRH67087	Soybean	nucleus	69.08	62.13
KRG95412	Soybean	nucleus	69.08	61.4
KRH58384	Soybean	nucleus	20.72	19.69
KRH42263	Soybean	nucleus	20.72	19.69

Protein Annotations

EntrezGene:100793457	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:ACUP02009717
EnsemblPlantsGene:GLYMA_15G237300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	UniProt:I1MIS9	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	ProteinID:KRH13408.1	EnsemblPlants:KRH13409	ProteinID:KRH13409
ProteinID:KRH13409.1	ProteinID:KRH13410.1	ProteinID:KRH13411.1	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like
UniParc:UPI000233B8C9	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:

Description

hypothetical protein

Coordinates

chr15:-:44703836..44709286

Molecular Weight (calculated)

34394.1 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.404

Length

304 amino acids

Sequence
(BLAST)

001: MASSNLFFDD IRSKVDVDPP QNDESTDVGE LVNDPAQTAL KPNGTVSSSV RELLECPVCL NAMYPPIHQC SNGHTICSGC KPRVHNRCPT CRHELGNIRC
101: LALEKVAASL ELPCKYQGFG CIGIYPYYSK LKHESQCAHR PYNCPYAGSE CSIMGDIPYL VAHLKDDHKV DMHNGSTFNH RYVKSNPQEV ENATWMLTVF
201: SCFGQYFCLH FEAFQLGMAP VYIAFLRFMG DDNEAKNYSY SLEVGGNGRK MIWQGVPRSI RDSHRKVRDS FDGLIIQRNM ALFFSGGDRK ELKLRVTGRI
301: WKEQ

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.