Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH67087 | Soybean | nucleus | 96.2 | 97.34 |
| CDX71977 | Canola | cytosol | 74.56 | 82.26 |
| CDY57244 | Canola | cytosol | 73.98 | 82.14 |
| CDY56244 | Canola | cytosol | 69.3 | 82.01 |
| AT3G58040.3 | Thale cress | cytosol | 73.68 | 81.82 |
| Bra003315.1-P | Field mustard | cytosol, nucleus, plastid | 61.7 | 81.15 |
| CDY67927 | Canola | cytosol | 73.68 | 81.03 |
| CDX88968 | Canola | cytosol | 73.68 | 81.03 |
| CDY06056 | Canola | cytosol | 61.99 | 80.92 |
| AT2G41980.1 | Thale cress | nucleus | 71.93 | 80.66 |
| Bra014589.1-P | Field mustard | nucleus | 67.84 | 79.45 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 72.81 | 79.05 |
| CDY06889 | Canola | cytosol | 68.42 | 78.79 |
| CDY64066 | Canola | cytosol | 24.85 | 78.7 |
| Bra008328.1-P | Field mustard | cytosol | 24.56 | 77.78 |
| CDY14808 | Canola | cytosol | 68.42 | 77.48 |
| Bra016898.1-P | Field mustard | cytosol | 68.42 | 76.72 |
| CDY35390 | Canola | nucleus | 68.71 | 76.55 |
| Bra000249.1-P | Field mustard | nucleus | 68.71 | 76.55 |
| CDY22549 | Canola | nucleus | 69.01 | 76.38 |
| PGSC0003DMT400060947 | Potato | cytosol | 52.34 | 73.06 |
| PGSC0003DMT400060943 | Potato | cytosol | 52.34 | 73.06 |
| Bra007376.1-P | Field mustard | cytosol | 57.89 | 71.74 |
| KRH13409 | Soybean | cytosol | 61.4 | 69.08 |
| KRH64440 | Soybean | cytosol | 63.45 | 67.18 |
| KRG97189 | Soybean | nucleus | 60.82 | 66.24 |
| KRH53502 | Soybean | cytosol | 63.16 | 66.06 |
| Solyc10g080570.1.1 | Tomato | cytosol | 57.31 | 64.69 |
| CDY67899 | Canola | cytosol, plastid | 31.29 | 64.46 |
| KRH68916 | Soybean | nucleus | 60.82 | 63.41 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 39.47 | 61.09 |
| KRH20763 | Soybean | nucleus | 61.7 | 60.46 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 47.95 | 59.42 |
| CDY38819 | Canola | nucleus | 31.29 | 55.15 |
| KRH58384 | Soybean | nucleus | 19.59 | 20.94 |
| KRH42263 | Soybean | nucleus | 19.3 | 20.62 |
Protein Annotations
| EntrezGene:100813966 | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A0R0EYW7 |
| EMBL:ACUP02012106 | EnsemblPlantsGene:GLYMA_19G149600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 |
| EnsemblPlants:KRG95412 | ProteinID:KRG95412 | ProteinID:KRG95412.1 | PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 | InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like |
| UniParc:UPI0006EDC30A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr19:+:40982521..40986337
Molecular Weight (calculated)
38307.6 Da
IEP (calculated)
8.119
GRAVY (calculated)
-0.453
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNLNEGRDV ACHKSRSSGS LSSGKKYCRS GLAMAPGSSV FKEVLESHLM SSDYETGKAK SEAKSNITST KSSVGLSGKS GISSNNGVYE LLGCPVCKNL
101: MYPPIHQCPN GHTLCSHCKV EVHNICPSCH HDLGNIRCLA LEKVAESLEL PCRYQSLGCH DIFPYYTKLK HEQNCGFRPY NCPYAGSECS VMGDIPTLVA
201: HLKDDHKVDM HDGCTFNHRY VKANPHEVEN ATWMLTVFNS FGRHFCLHFE AFQLGSAPVY MAFLRFMGDD NEAKKFSYSL EVGANGRKLI WQGIPRSIRD
301: SHRKVRDSQD GLIIQRNLAL YFSGGERQEL KLRITGRIWR EE
101: MYPPIHQCPN GHTLCSHCKV EVHNICPSCH HDLGNIRCLA LEKVAESLEL PCRYQSLGCH DIFPYYTKLK HEQNCGFRPY NCPYAGSECS VMGDIPTLVA
201: HLKDDHKVDM HDGCTFNHRY VKANPHEVEN ATWMLTVFNS FGRHFCLHFE AFQLGSAPVY MAFLRFMGDD NEAKKFSYSL EVGANGRKLI WQGIPRSIRD
301: SHRKVRDSQD GLIIQRNLAL YFSGGERQEL KLRITGRIWR EE
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.