CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00424
KRH03382
KRH40763
KRH56999

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	KRH03382	AT1G19010.1	21798944
AT3G61790.1	KRH56999	AT1G19010.1	21798944
AT3G61790.1	KRH00424	AT2G38490.1	21798944
AT3G61790.1	KRH40763	AT2G38490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68916	Soybean	nucleus	95.54	91.46
VIT_02s0025g01660.t01	Wine grape	cytosol	85.03	84.49
KRH64440	Soybean	cytosol	83.12	80.81
KRH53502	Soybean	cytosol	83.44	80.12
PGSC0003DMT400048586	Potato	mitochondrion	81.53	79.75
Bra003473.1-P	Field mustard	nucleus	80.57	79.56
Solyc10g009420.2.1	Tomato	nucleus	79.94	79.43
CDY25077	Canola	nucleus	81.21	78.95
CDX67865	Canola	nucleus	81.21	78.95
CDX92848	Canola	nucleus	76.11	78.36
Solyc01g096020.2.1	Tomato	cytosol	82.48	77.78
Solyc05g050580.2.1	Tomato	nucleus	81.85	77.64
AT3G61790.1	Thale cress	nucleus	80.57	77.61
PGSC0003DMT400018049	Potato	nucleus	82.17	77.48
PGSC0003DMT400000649	Potato	cytosol	82.48	77.08
GSMUA_Achr5P06970_001	Banana	cytosol	78.98	76.54
CDY43950	Canola	nucleus	78.98	76.31
CDY14268	Canola	nucleus	77.71	76.25
Bra010392.1-P	Field mustard	nucleus	77.71	76.25
CDX89132	Canola	cytosol	78.98	76.07
CDY19018	Canola	nucleus	77.71	75.78
CDX89221	Canola	nucleus	77.39	75.47
Bra026301.1-P	Field mustard	nucleus	77.39	75.47
CDX97399	Canola	nucleus	77.07	75.39
Bra014421.1-P	Field mustard	cytosol	76.75	75.31
AT4G27880.1	Thale cress	nucleus	78.03	74.92
KRH13409	Soybean	cytosol	68.47	70.72
KRH20763	Soybean	nucleus	68.79	61.89
KRH67087	Soybean	nucleus	66.56	61.83
KRG95412	Soybean	nucleus	66.24	60.82
VIT_15s0046g00400.t01	Wine grape	cytosol	49.04	57.04
VIT_00s0426g00040.t01	Wine grape	mitochondrion	42.36	55.19
VIT_15s0046g00390.t01	Wine grape	nucleus	45.54	53.16
VIT_15s0046g00410.t01	Wine grape	cytosol	28.34	49.17
VIT_00s0726g00020.t01	Wine grape	extracellular	17.83	48.7
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	16.24	48.11
VIT_15s0046g00380.t01	Wine grape	cytosol	37.9	47.79
KRH58384	Soybean	nucleus	21.02	20.62
KRH42263	Soybean	nucleus	20.06	19.69

Protein Annotations

EntrezGene:100792687	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:ACUP02012179
EnsemblPlantsGene:GLYMA_19G256200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	UniProt:I1NCL9	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlants:KRG97189	ProteinID:KRG97189	ProteinID:KRG97189.1
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000233EEB5	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:50029415..50032583

Molecular Weight (calculated)

35774.7 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.413

Length

314 amino acids

Sequence
(BLAST)

001: MSERMESSSI ESSTVSSMTM MEEDEHPHQF SSISKLHSNG PTTTSVHDLL ECPVCTNSMY PPIHQCHNGH TLCSTCKTRV HNRCPTCRQE LGDIRCLALE
101: KIAESLELPC RYISLGCPEI FPYYSKLKHE AICNFRPYNC PYAGSDCSVV GDIPCLVAHL RDDHRVDMHS GCTFNHRYVK SNPMEVENAT WMLTVFHCFG
201: QYFCLHFEAF QLGMAPVYMA FLRFMGDERE ARNYSYSLEV GGNGRKLTFE GSPRSIRDSH KKVRDSHDGL IIYRNMALFF SGGDRKELKL RVTGRIWKEQ
301: QNPEGGVCIP NLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.