Factsheet for PGSC0003DMT400018049

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050580.2.1	Tomato	nucleus	98.5	99.09
PGSC0003DMT400048586	Potato	mitochondrion	83.48	86.6
PGSC0003DMT400000649	Potato	cytosol	86.79	86.01
VIT_02s0025g01660.t01	Wine grape	cytosol	81.38	85.76
PGSC0003DMT400050427	Potato	cytosol	80.78	85.4
PGSC0003DMT400023575	Potato	cytosol	80.48	85.35
KRG97189	Soybean	nucleus	77.48	82.17
GSMUA_Achr5P06970_001	Banana	cytosol	75.38	77.47
KRH68916	Soybean	nucleus	76.28	77.44
PGSC0003DMT400054414	Potato	cytosol	65.47	71.48
PGSC0003DMT400060943	Potato	cytosol	51.05	69.39
PGSC0003DMT400060947	Potato	cytosol	51.05	69.39
PGSC0003DMT400081996	Potato	cytosol	60.06	64.94
PGSC0003DMT400010948	Potato	cytosol	60.36	64.84
VIT_15s0046g00400.t01	Wine grape	cytosol	47.75	58.89
VIT_00s0426g00040.t01	Wine grape	mitochondrion	41.14	56.85
VIT_15s0046g00390.t01	Wine grape	nucleus	44.74	55.39
VIT_15s0046g00410.t01	Wine grape	cytosol	28.83	53.04
VIT_00s0726g00020.t01	Wine grape	extracellular	16.52	47.83
VIT_15s0046g00380.t01	Wine grape	cytosol	35.44	47.39
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.02	47.17
PGSC0003DMT400043047	Potato	cytosol	12.01	21.74
PGSC0003DMT400043050	Potato	nucleus	20.12	17.59

Protein Annotations

EntrezGene:102601918	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M1A9Y7	PFAM:PF03145	EnsemblPlantsGene:PGSC0003DMG400007012
PGSC:PGSC0003DMG400007012	EnsemblPlants:PGSC0003DMT400018049	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000296FCAF	RefSeq:XP_006345554.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

Ubiquitin ligase SINAT3 [Source:PGSC_GENE;Acc:PGSC0003DMG400007012]

Coordinates

chr5:-:44943787..44948325

Molecular Weight (calculated)

37523.3 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.492

Length

333 amino acids

Sequence
(BLAST)

001: MELDSIECVS SSDGMIDDDE IPLHHPHIIH SQYSSSKTPN NNNNNINNSS SNNDGIAAIH STTSVHELLE CPVCTNSMYP PIHQCHNGHT ICSTCKARAH
101: NRCPTCRQEL GDIRCLALEK VAESLELPCK YGSVGCPEIF PYYSKLKHES VCNFRPYSCP YAGSECSVVG DIPYLVSHLR DDHKVDMHSG CTFNHRYVKS
201: NPREVENATW MLTVFNCFGQ CFCLHFEAFQ LGTAPVYMAF LRFMGDEMEA RNYSYSLEVG GNGRKLTWEG TPRSIRDSHR KVRDSHDGLV IQRNMALFFS
301: GGERKELKLR VTGRIWKEQQ NPDGGACMPN LCT

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.