Factsheet for PGSC0003DMT400000649

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096020.2.1	Tomato	cytosol	98.81	99.7
PGSC0003DMT400048586	Potato	mitochondrion	85.71	89.72
VIT_02s0025g01660.t01	Wine grape	cytosol	83.33	88.61
PGSC0003DMT400018049	Potato	nucleus	86.01	86.79
PGSC0003DMT400023575	Potato	cytosol	80.65	86.31
PGSC0003DMT400050427	Potato	cytosol	80.06	85.4
KRG97189	Soybean	nucleus	77.08	82.48
GSMUA_Achr5P06970_001	Banana	cytosol	76.19	79.01
KRH68916	Soybean	nucleus	75.3	77.13
PGSC0003DMT400054414	Potato	cytosol	65.77	72.46
PGSC0003DMT400060943	Potato	cytosol	49.7	68.16
PGSC0003DMT400060947	Potato	cytosol	49.7	68.16
PGSC0003DMT400010948	Potato	cytosol	60.42	65.48
PGSC0003DMT400081996	Potato	cytosol	59.82	65.26
VIT_15s0046g00400.t01	Wine grape	cytosol	45.54	56.67
VIT_00s0426g00040.t01	Wine grape	mitochondrion	38.99	54.36
VIT_15s0046g00390.t01	Wine grape	nucleus	42.26	52.79
VIT_15s0046g00410.t01	Wine grape	cytosol	27.98	51.93
VIT_15s0046g00380.t01	Wine grape	cytosol	34.82	46.99
VIT_00s0726g00020.t01	Wine grape	extracellular	15.77	46.09
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	14.29	45.28
PGSC0003DMT400043047	Potato	cytosol	11.61	21.2
PGSC0003DMT400043050	Potato	nucleus	19.64	17.32

Protein Annotations

EntrezGene:102584453	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0ZH33	PFAM:PF03145	EnsemblPlantsGene:PGSC0003DMG400000229
PGSC:PGSC0003DMG400000229	EnsemblPlants:PGSC0003DMT400000649	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002967AA2	RefSeq:XP_006339718.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

Ubiquitin ligase SINAT3 [Source:PGSC_GENE;Acc:PGSC0003DMG400000229]

Coordinates

chr1:-:73528280..73531786

Molecular Weight (calculated)

37848.8 Da

IEP (calculated)

6.733

GRAVY (calculated)

-0.454

Length

336 amino acids

Sequence
(BLAST)

001: MEFDSIECVS SSDGIEEDEI PQLHPHIIRS QFSSSKTTTH KNNNNNNGSS ILCDGNNGGI AIHPATSVHE LLECPVCTNS MYPPIHQCHN GHTICSTCKA
101: RVHNRCPTCR QELGDIRCLA LEKVAESLEL PCKFGSLGCP EIFPYYSKLK HEAACNFRPY NCPYAGSECA AVGDIPYLVT HLRDDHKVDM HSGCTFNHRY
201: VKSNPREVEN ATWMLTVFNC FGQYFCLHFE AFQLGMAPVY MAFLRFMGDE TDAQNYTYSL EVGGNGRKLI WEGTPRSIRD SHRKVRDSHD GLVIQRNMAL
301: FFSGGDRKEL KLRVTGRIWK EQQNPDEGAC IPNLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.