Factsheet for VIT_15s0046g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02240.t01
VIT_17s0000g07490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	VIT_17s0000g07490.t01	AT1G19010.1	21798944
AT3G61790.1	VIT_01s0010g02240.t01	AT3G26050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g00400.t01	Wine grape	cytosol	84.01	83.7
VIT_00s0426g00040.t01	Wine grape	mitochondrion	71.0	79.25
VIT_15s0046g00410.t01	Wine grape	cytosol	50.93	75.69
VIT_00s0726g00020.t01	Wine grape	extracellular	30.11	70.43
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	26.02	66.04
VIT_15s0046g00380.t01	Wine grape	cytosol	58.36	63.05
Solyc03g083270.2.1	Tomato	cytosol	53.53	46.01
PGSC0003DMT400023575	Potato	cytosol	53.53	45.86
PGSC0003DMT400050427	Potato	cytosol	53.53	45.71
Solyc06g051980.2.1	Tomato	cytosol	53.53	45.71
VIT_02s0025g01660.t01	Wine grape	cytosol	53.53	45.57
KRG97189	Soybean	nucleus	53.16	45.54
GSMUA_Achr6P22600_001	Banana	cytosol	52.42	45.05
VIT_06s0004g01130.t01	Wine grape	cytosol	51.3	44.81
PGSC0003DMT400018049	Potato	nucleus	55.39	44.74
Solyc05g050580.2.1	Tomato	nucleus	55.02	44.71
Solyc10g009420.2.1	Tomato	nucleus	52.42	44.62
VIT_16s0098g01850.t01	Wine grape	cytosol	53.9	44.34
Bra003473.1-P	Field mustard	nucleus	52.42	44.34
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	50.19	44.26
CDX92848	Canola	nucleus	50.19	44.26
CDX97399	Canola	nucleus	52.79	44.24
Bra010392.1-P	Field mustard	nucleus	52.42	44.06
CDY14268	Canola	nucleus	52.42	44.06
PGSC0003DMT400048586	Potato	mitochondrion	52.42	43.93
CDY25077	Canola	nucleus	52.42	43.65
CDX67865	Canola	nucleus	52.42	43.65
KRH68916	Soybean	nucleus	53.16	43.6
AT3G61790.1	Thale cress	nucleus	52.79	43.56
CDX89221	Canola	nucleus	52.04	43.48
Bra026301.1-P	Field mustard	nucleus	52.04	43.48
CDY19018	Canola	nucleus	52.04	43.48
Bra014421.1-P	Field mustard	cytosol	51.67	43.44
AT4G27880.1	Thale cress	nucleus	52.04	42.81
Solyc01g096020.2.1	Tomato	cytosol	52.79	42.64
CDX89132	Canola	cytosol	51.67	42.64
CDY43950	Canola	nucleus	51.3	42.46
PGSC0003DMT400000649	Potato	cytosol	52.79	42.26
VIT_08s0007g06740.t01	Wine grape	cytosol	49.44	42.22
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	49.44	38.22
VIT_14s0006g01870.t01	Wine grape	cytosol	13.38	18.0

Protein Annotations

EntrezGene:100257109	wikigene:100257109	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom
ProteinID:CBI40556	ProteinID:CBI40556.3	UniProt:D7UCU1	EMBL:FN596755	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EntrezGene:LOC100257109
wikigene:LOC100257109	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF34
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00015CDB8C	ArrayExpress:VIT_15s0046g00390
EnsemblPlantsGene:VIT_15s0046g00390	EnsemblPlants:VIT_15s0046g00390.t01	RefSeq:XP_002263725	RefSeq:XP_002263725.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7UCU1]

Coordinates

chr15:+:17384848..17387511

Molecular Weight (calculated)

30280.7 Da

IEP (calculated)

7.975

GRAVY (calculated)

-0.147

Length

269 amino acids

Sequence
(BLAST)

001: MGNRVADLHS LTKFQEILKC SVCFDFMQSP IYQCHNGHTL CSSCKARVLN KCPGCRQQLG NIRCLALEKM AKSLELHCKY EEFGCPEIIP YHTKLMHEDS
101: CNFRPYSCPW YGCPCSAVGD IPLLVSHLTD YHKAVMFNSC NFKHGFLIGD LYKNPGRRWI VIIINCFDKH FCLHAEAFLI GSTPVYMAFL SLIGNHAEAG
201: NYSYSLQIGG NGRKLTFEGV PQSIRESERR SLESADSLIV PGGMVHSLGG ETREPKLEIT SRIWKTQCG

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.