Factsheet for GSMUA_Achr10P26220_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	59.77	81.25
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	51.15	73.55
GSMUA_Achr6P22600_001	Banana	cytosol	65.23	72.52
GSMUA_Achr1P13770_001	Banana	cytosol	64.94	72.44
GSMUA_Achr9P05880_001	Banana	nucleus	64.37	72.03
GSMUA_Achr2P09260_001	Banana	nucleus	64.37	71.57
VIT_02s0025g01660.t01	Wine grape	cytosol	64.37	70.89
GSMUA_Achr3P16360_001	Banana	cytosol	63.79	70.7
GSMUA_Achr5P06970_001	Banana	cytosol	64.08	68.83
GSMUA_Achr11P...	Banana	nucleus	55.75	65.1
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	10.92	57.58
GSMUA_Achr3P08700_001	Banana	cytosol	56.61	57.1
VIT_15s0046g00400.t01	Wine grape	cytosol	41.38	53.33
VIT_00s0426g00040.t01	Wine grape	mitochondrion	36.21	52.28
GSMUA_Achr3P15050_001	Banana	nucleus	45.69	49.84
VIT_15s0046g00390.t01	Wine grape	nucleus	38.22	49.44
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	12.07	48.28
VIT_15s0046g00410.t01	Wine grape	cytosol	24.71	47.51
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	13.51	44.34
VIT_15s0046g00380.t01	Wine grape	cytosol	30.75	42.97
VIT_00s0726g00020.t01	Wine grape	extracellular	14.08	42.61

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G26220_001	EnsemblPlants:GSMUA_Achr10P26220_001
EnsemblPlants:GSMUA_Achr10T26220_001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0RLJ6
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002950409	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G26220_001]

Coordinates

chr10:+:29899102..29901808

Molecular Weight (calculated)

38982.3 Da

IEP (calculated)

6.549

GRAVY (calculated)

-0.421

Length

348 amino acids

Sequence
(BLAST)

001: MYSFSSPLPY DPSHGSPGGG GGEKASTWTL LRSLECMSLS VDMLDGEKVA LVPNSLKPPG AGDDAAGGGS GLPATQITSN SRVNELLECP VCTNTMYPPI
101: HQCRNGHTLC SSCKPRVQDQ CPTCRQELGD IRCLALEKVA EFFELPCKYL SLGCPEIFPY YNKLKHEAQC NFRPYNCPYA GWECSVEGNI PFLVAHLRDD
201: HKVDTHTGCT VNHRYVKPNP REVENATWML TIFHCFEQHF CMHFEAFQLG MAPVYIAFLQ FMGDENEAHN YRYRLEVGSN GRKLTWEGIP RSIRDSHQEV
301: RDSHDGLIIP GNMAIFFSGN KKDLKLRVTG RIWKEEQHSD TALSSVTP

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.