Factsheet for GSMUA_Achr1P13770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P09260_001	Banana	nucleus	92.95	92.65
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	73.4	89.45
GSMUA_Achr9P05880_001	Banana	nucleus	88.14	88.42
GSMUA_Achr3P16360_001	Banana	cytosol	88.78	88.22
GSMUA_Achr6P22600_001	Banana	cytosol	83.97	83.71
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	62.5	80.58
GSMUA_Achr5P06970_001	Banana	cytosol	80.13	77.16
GSMUA_Achr11P...	Banana	nucleus	69.55	72.82
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	14.1	66.67
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	72.44	64.94
GSMUA_Achr3P08700_001	Banana	cytosol	70.19	63.48
GSMUA_Achr3P15050_001	Banana	nucleus	56.73	55.49
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	15.06	54.02

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr1G13770_001	EnsemblPlants:GSMUA_Achr1P13770_001
EnsemblPlants:GSMUA_Achr1T13770_001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0RZN5
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002956490	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT5 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13770_001]

Coordinates

chr1:+:10500939..10506225

Molecular Weight (calculated)

35147.7 Da

IEP (calculated)

6.932

GRAVY (calculated)

-0.456

Length

312 amino acids

Sequence
(BLAST)

001: MGSDSIECVS SIDGMDEEDT ARTQSSKPHG GAAPPAGIAP STSVHELLEC PVCANSMYPP IHQCQNGHTL CSTCKTRVQN RCPTCRQELG DIRCLALEKV
101: AESLELPCKY YSHGCPEVFP YYSKLKHESQ CNYRPYNCPY AGSECSVVGD IPFLVTHLRD DHKVDMHTGC TFNHRYVKSN PREVENATWM LTVFNCFGQS
201: FCLHFEAFQL GMAPVYMAFL RFMGDENDAR NFSYSLEVGA NGRKLTWEGT PRSIRDSHRK VRDSHDGLII QRNMALFFSG CERKELKLRV TGRIWKEQQN
301: SDAAVCMPNL CS

Best Arabidopsis Sequence Match ( AT4G27880.1 )
(BLAST)

001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS

Arabidopsis Description

SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.