Factsheet for GSMUA_Achr9P05880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

cytosol: 28659946
nucleus: 28659946
plasma membrane: 28659946

gfp PMID: 28659946 doi

ZQ Fan, JY Chen, JF Kuang, WJ Lu, W Shan

State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources/Guangdong Provincial Key Laboratory of Post-harvest Science of Fruits and Vegetables, College of Horticulture, South China Agricultural UniversityGuangzhou, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	73.31	89.06
GSMUA_Achr3P16360_001	Banana	cytosol	89.71	88.85
GSMUA_Achr2P09260_001	Banana	nucleus	89.07	88.5
GSMUA_Achr1P13770_001	Banana	cytosol	88.42	88.14
GSMUA_Achr6P22600_001	Banana	cytosol	84.24	83.71
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	63.02	80.99
GSMUA_Achr5P06970_001	Banana	cytosol	81.03	77.78
GSMUA_Achr11P...	Banana	nucleus	69.77	72.82
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	14.47	68.18
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	72.03	64.37
GSMUA_Achr3P08700_001	Banana	cytosol	68.81	62.03
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	15.76	56.32
GSMUA_Achr3P15050_001	Banana	nucleus	56.91	55.49

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr9G05880_001	EnsemblPlants:GSMUA_Achr9P05880_001
EnsemblPlants:GSMUA_Achr9T05880_001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0TXU7
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002969B4D	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT5 [Source:GMGC_GENE;Acc:GSMUA_Achr9G05880_001]

Coordinates

chr9:-:3752979..3756322

Molecular Weight (calculated)

35158.0 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.383

Length

311 amino acids

Sequence
(BLAST)

001: MDSDSIECVS SVDGMDEEVT SLPHRSSFKP HGAAVVAPAT SVHELLECPV CTNSMYPPIH QCQNGHTLCS TCKMRVQNRC PTCRQELGDI RCLALEKVAE
101: SLELPCKYYA LGCPEIFPYY SKLTHEAQCN HRPYNCPYAG SECSAVGDIP FLITHLRDDH KVDMHTGCTF NHRYVKSNPR EVENATWMLT VFNCFGHYFC
201: LHFEAFQLGM APVYMAFLRF MGDENEARNF SYSLEVGANG RKLTWEGTPR SIRDGHRKVR DSHDGLIIQR NMALFFSGGD RKGLKLRVIG RIWKEQQNSD
301: AGVCMPKHCS S

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.