Factsheet for GSMUA_Achr3P16360_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P09260_001	Banana	nucleus	91.4	91.69
GSMUA_Achr9P05880_001	Banana	nucleus	88.85	89.71
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	72.93	89.45
GSMUA_Achr1P13770_001	Banana	cytosol	88.22	88.78
GSMUA_Achr6P22600_001	Banana	cytosol	84.39	84.66
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	64.33	83.47
GSMUA_Achr5P06970_001	Banana	cytosol	80.57	78.09
GSMUA_Achr11P...	Banana	nucleus	71.02	74.83
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	14.33	68.18
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	70.7	63.79
GSMUA_Achr3P08700_001	Banana	cytosol	69.75	63.48
GSMUA_Achr3P15050_001	Banana	nucleus	57.64	56.74
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	15.61	56.32

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr3G16360_001	EnsemblPlants:GSMUA_Achr3P16360_001
EnsemblPlants:GSMUA_Achr3T16360_001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0SF52
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002968A9D	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT5 [Source:GMGC_GENE;Acc:GSMUA_Achr3G16360_001]

Coordinates

chr3:+:17578436..17582250

Molecular Weight (calculated)

35235.0 Da

IEP (calculated)

6.944

GRAVY (calculated)

-0.408

Length

314 amino acids

Sequence
(BLAST)

001: MDSDGIECVS SIDGMDEETS LPHHTSSKAH GVGGGPHPGV APATSVHELL ECPVCTNSMY PPIHQCQNGH TLCSTCKTRV HNRCPTCRQE LGDIRCLALE
101: KVAESLELPC KYGSLGCPEI FPYYSKLKHE SQCSYRPYSC PYAGSECLVV GDIPFLVTHL RDDHKVDMHT GCTFNHRYVK SNPREVENAT WMLTVFNCFG
201: HYFCLHFEAF QLGMAPVYMA FLRFMGDENE ARSFSYSLEV GANGRKLTWE GTPRSIRDGH RKVRDSHDGL IIQRNMALFF SGGDRKELKL RVTGRIWKEQ
301: QGNETGVCMP NLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.