Factsheet for GSMUA_Achr6P22600_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	73.16	89.45
VIT_02s0025g01660.t01	Wine grape	cytosol	86.58	85.76
GSMUA_Achr2P09260_001	Banana	nucleus	84.98	84.98
GSMUA_Achr3P16360_001	Banana	cytosol	84.66	84.39
GSMUA_Achr9P05880_001	Banana	nucleus	83.71	84.24
GSMUA_Achr1P13770_001	Banana	cytosol	83.71	83.97
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	64.22	83.06
GSMUA_Achr5P06970_001	Banana	cytosol	81.79	79.01
GSMUA_Achr11P...	Banana	nucleus	70.93	74.5
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	14.7	69.7
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	72.52	65.23
GSMUA_Achr3P08700_001	Banana	cytosol	71.25	64.64
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	15.65	56.32
VIT_15s0046g00400.t01	Wine grape	cytosol	47.92	55.56
GSMUA_Achr3P15050_001	Banana	nucleus	56.23	55.17
VIT_00s0426g00040.t01	Wine grape	mitochondrion	41.53	53.94
VIT_15s0046g00390.t01	Wine grape	nucleus	45.05	52.42
VIT_15s0046g00410.t01	Wine grape	cytosol	30.03	51.93
VIT_15s0046g00380.t01	Wine grape	cytosol	36.1	45.38
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.34	45.28
VIT_00s0726g00020.t01	Wine grape	extracellular	16.29	44.35

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr6G22600_001	EnsemblPlants:GSMUA_Achr6P22600_001
EnsemblPlants:GSMUA_Achr6T22600_001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0T9A8
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00029603C5	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT5 [Source:GMGC_GENE;Acc:GSMUA_Achr6G22600_001]

Coordinates

chr6:+:20643310..20648473

Molecular Weight (calculated)

35408.2 Da

IEP (calculated)

7.143

GRAVY (calculated)

-0.443

Length

313 amino acids

Sequence
(BLAST)

001: MESDSVDCVS LTDGLDEEEV TQHRHPFPKP HGSGAPPLPG IAPATSVHEL LECPVCTNSM YPPIHQCRNG HTLCSTCKSR VHNRCPTCRQ ELGDIRCLAL
101: EKVAESLELP CKYSTLGCPE IFPYYSKLKH EARCNFRPYN CPYAGSECSV VGEIPFLVAH LRDDHKVDMH TGCTFNHRYV KSNPREVENA TWMLTVFYCF
201: GQYFCLHFEA FQLGIAPVYM AFLRFMGDEN EARNFSYSLE VGGNGRKLTW EGTPRSIRDG HRKVRDSHDG LVIQRNMALF FSGGDRKELK LRVTGRIWKE
301: QPNPDSGVCA QSL

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.