Factsheet for GSMUA_Achr10P22290_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	78.91	83.47
GSMUA_Achr2P09260_001	Banana	nucleus	91.8	75.08
KRH64440	Soybean	cytosol	93.36	73.99
GSMUA_Achr5P06970_001	Banana	cytosol	93.36	73.77
GSMUA_Achr1P13770_001	Banana	cytosol	89.45	73.4
VIT_16s0098g01850.t01	Wine grape	cytosol	93.75	73.39
GSMUA_Achr9P05880_001	Banana	nucleus	89.06	73.31
GSMUA_Achr6P22600_001	Banana	cytosol	89.45	73.16
KRH53502	Soybean	cytosol	93.36	73.09
GSMUA_Achr3P16360_001	Banana	cytosol	89.45	72.93
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	18.75	72.73
GSMUA_Achr11P...	Banana	nucleus	78.52	67.45
GSMUA_Achr3P08700_001	Banana	cytosol	81.25	60.29
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	81.25	59.77
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	19.53	57.47
GSMUA_Achr3P15050_001	Banana	nucleus	62.5	50.16

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G22290_001	EnsemblPlants:GSMUA_Achr10P22290_001
EnsemblPlants:GSMUA_Achr10T22290_001	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0RKF4	PFAM:PF03145
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI000294FA0A	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

E3 ubiquitin-protein ligase SINAT4 [Source:GMGC_GENE;Acc:GSMUA_Achr10G22290_001]

Coordinates

chr10:-:27512623..27516322

Molecular Weight (calculated)

29535.4 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.423

Length

256 amino acids

Sequence
(BLAST)

001: MYPPIHQCHN GHTLCSTCKS RVHNRCPTCR QELGDIRCLA LEKVAESLEL PCRYLSLGCP EIFPYYSKLK HEAQCNFRPY NCPYAGSECS VVGDIPFLVA
101: HLRDDHKVDM HIGSTFNHRY VKSNPREVEN ATWMLTVFHC FGQYFCLHFE AFQLGMAPVY MAFLRFMGDE NEARYYSYSL EVGSNGRKLI WEGIPRSIRD
201: SHRKVRDSHD GLIIQRNMAL FFSGGDRKEL KLRVTGRIWK EQQNLDAGVS TPNPCS

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.