Factsheet for VIT_16s0098g01850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	73.39	93.75
VIT_02s0025g01660.t01	Wine grape	cytosol	86.54	89.56
KRH64440	Soybean	cytosol	88.07	89.16
KRH53502	Soybean	cytosol	88.69	88.69
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	68.5	73.44
VIT_06s0004g01130.t01	Wine grape	cytosol	64.83	68.83
VIT_08s0007g06740.t01	Wine grape	cytosol	66.06	68.57
VIT_15s0046g00400.t01	Wine grape	cytosol	47.71	57.78
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.67	55.19
VIT_15s0046g00390.t01	Wine grape	nucleus	44.34	53.9
VIT_15s0046g00410.t01	Wine grape	cytosol	29.66	53.59
VIT_15s0046g00380.t01	Wine grape	cytosol	35.17	46.18
VIT_00s0726g00020.t01	Wine grape	extracellular	16.21	46.09
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	14.68	45.28
VIT_14s0006g01870.t01	Wine grape	cytosol	13.46	22.0

Protein Annotations

EntrezGene:100252009	wikigene:100252009	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom
EMBL:AM476019	ProteinID:CAN75137	ProteinID:CAN75137.1	ProteinID:CCB48043	ProteinID:CCB48043.1	UniProt:F6H779
EMBL:FN595247	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	EntrezGene:LOC100252009	wikigene:LOC100252009	PFAM:PF03145	PFscan:PS50089
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850
InterPro:TRAF-like	UniParc:UPI00015CBADA	ArrayExpress:VIT_16s0098g01850	EnsemblPlantsGene:VIT_16s0098g01850	EnsemblPlants:VIT_16s0098g01850.t01	unigene:Vvi.6132
RefSeq:XP_002277712	RefSeq:XP_002277712.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F6H779]

Coordinates

chr16:-:21934571..21938382

Molecular Weight (calculated)

37401.5 Da

IEP (calculated)

7.016

GRAVY (calculated)

-0.452

Length

327 amino acids

Sequence
(BLAST)

001: MDLDNIECVS SSDGMEEEEI HHLHHHHHNL NHNHVVHQFS SKPLQNGVVP PATAPATSVH ELLECPVCTN SMYPPIHQCH NGHTLCSTCK TRVHNRCPTC
101: RQELGDIRCL ALEKVAESLE LPCKYYSLGC PEIFPYYSKL KHEAVCNFRP YNCPYAGSEC SVVGDIPFLV SHLRDDHKVD MHTGCTFNHR YVKSNPREVE
201: NATWMLTVFH CFGQYFCLHF EAFQLGMSPV YMAFLRFMGD ENEARNYGYS LEVGANGRKL IWEGTPRSIR DSHRKVRDSH DGLIIQRNMA LFFSGGDRKE
301: LKLRVTGRIW KEQQNQDAGV CIPNLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.