Factsheet for VIT_06s0004g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g06740.t01	Wine grape	cytosol	78.25	76.51
PGSC0003DMT400081996	Potato	cytosol	72.73	72.73
Solyc01g006190.2.1	Tomato	cytosol	72.73	72.73
PGSC0003DMT400010948	Potato	cytosol	73.05	72.58
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	68.18	68.85
VIT_02s0025g01660.t01	Wine grape	cytosol	69.81	68.04
VIT_16s0098g01850.t01	Wine grape	cytosol	68.83	64.83
CDX75727	Canola	cytosol	39.61	57.01
Bra001519.1-P	Field mustard	nucleus	38.64	55.61
CDX82523	Canola	cytosol	38.64	55.61
VIT_15s0046g00400.t01	Wine grape	cytosol	46.75	53.33
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.58	51.87
VIT_15s0046g00390.t01	Wine grape	nucleus	44.81	51.3
AT3G13672.2	Thale cress	nucleus	40.26	51.03
VIT_15s0046g00410.t01	Wine grape	cytosol	28.25	48.07
VIT_15s0046g00380.t01	Wine grape	cytosol	34.09	42.17
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	13.96	40.57
VIT_00s0726g00020.t01	Wine grape	extracellular	14.61	39.13
VIT_14s0006g01870.t01	Wine grape	cytosol	13.96	21.5

Protein Annotations

EntrezGene:100267231	wikigene:100267231	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom
EMBL:AM426164	ProteinID:CAN66717	ProteinID:CAN66717.1	ProteinID:CBI16472	ProteinID:CBI16472.3	UniProt:D7SLE4
EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	EntrezGene:LOC100267231	wikigene:LOC100267231	PFAM:PF03145	PFscan:PS50089
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850
InterPro:TRAF-like	UniParc:UPI00015C7B35	ArrayExpress:VIT_06s0004g01130	EnsemblPlantsGene:VIT_06s0004g01130	EnsemblPlants:VIT_06s0004g01130.t01	unigene:Vvi.17168
RefSeq:XP_002285659	RefSeq:XP_002285659.1	RefSeq:XP_010651339.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7SLE4]

Coordinates

chr6:-:1222180..1223740

Molecular Weight (calculated)

34900.2 Da

IEP (calculated)

7.957

GRAVY (calculated)

-0.309

Length

308 amino acids

Sequence
(BLAST)

001: MAPGGGICKE VCESRSAFAD YDVTTANLEL RSSPFRKATT GVGGKHGMPS TSGVHELLEC PVCMDLMHPP IHQCPNGHTL CSNCKARVHN CCPTCRFELG
101: NIRCLALEKI AESLELPCRY QIFGCHDIFP YYSKLKHEQN CQFRPYSCPY AGAECSVTGD IPLLVMHLKD DHKVDMHDGC TFNHRYVKSN PQEVENATWM
201: LTVFNCFGRQ FCLHFEAFHL GMAPVYMAFL RFMGDENEAR KFSYSLEVGG YGRKLIWQGV PRSIRDSHKM VRDSQDGLVI QRKLALFFSG GERQQLKLKV
301: AGRIWKEQ

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.