Factsheet for Solyc01g006190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081996	Potato	cytosol	99.03	99.03
VIT_06s0004g01130.t01	Wine grape	cytosol	72.73	72.73
Solyc03g083270.2.1	Tomato	cytosol	65.26	64.22
Solyc06g051980.2.1	Tomato	cytosol	65.58	64.13
Solyc10g009420.2.1	Tomato	nucleus	65.26	63.61
Solyc02g069880.2.1	Tomato	cytosol	40.58	61.88
Solyc10g080570.1.1	Tomato	cytosol	60.71	61.72
Solyc05g050580.2.1	Tomato	nucleus	65.26	60.73
Solyc01g096020.2.1	Tomato	cytosol	65.58	60.66
CDX75727	Canola	cytosol	39.61	57.01
Bra001519.1-P	Field mustard	nucleus	38.96	56.07
CDX82523	Canola	cytosol	38.96	56.07
AT3G13672.2	Thale cress	nucleus	39.61	50.21
Solyc06g017910.1.1	Tomato	cytosol	12.66	44.83
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.56	23.08
Solyc03g034460.2.1	Tomato	nucleus	21.1	18.06
Solyc03g042550.1.1	Tomato	nucleus	20.45	17.5
Solyc03g034450.2.1	Tomato	nucleus	21.75	17.09
Solyc03g042520.1.1	Tomato	nucleus	14.94	14.84

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:K4ASI5
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g006190.2	EnsemblPlants:Solyc01g006190.2.1	InterPro:TRAF-like	UniParc:UPI00027620AC
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4ASI5]

Coordinates

chr1:-:819250..823951

Molecular Weight (calculated)

34800.7 Da

IEP (calculated)

7.908

GRAVY (calculated)

-0.349

Length

308 amino acids

Sequence
(BLAST)

001: MAPGGSNYQD IGDSRSAYSD YGIAPESAEF KNSPFRKAAA VIGGKNGVGS NSAVHELLEC PVCMNPMYPP IHQCPNGHTL CVKCKSKVHV CPICRHELGN
101: IRCLALEKIA ESLELPCRYQ IYGCQDIFTY HTRLRHEQNC RFRPYNCPYA GSECAVTGDI QYLVAHLKDD HKVDMHDGCT FNHRYVKSNP QEVENATWML
201: TVFNCFGHQF CLHFEAFNLG LAPVYMAFLR FMGDDDDAKR FSYSLEVGGF GRKLTWQGVP RSIRDSHKTV RDSLDGLIIQ RSMALFFSGG DRKELKLKVA
301: GRIWREPL

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.