Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g096020.2.1 | Tomato | cytosol | 62.07 | 16.22 |
| Solyc06g051980.2.1 | Tomato | cytosol | 57.47 | 15.87 |
| Solyc10g009420.2.1 | Tomato | nucleus | 57.47 | 15.82 |
| Solyc03g083270.2.1 | Tomato | cytosol | 55.17 | 15.34 |
| Solyc05g050580.2.1 | Tomato | nucleus | 52.87 | 13.9 |
| Solyc01g006190.2.1 | Tomato | cytosol | 44.83 | 12.66 |
| Solyc10g080570.1.1 | Tomato | cytosol | 39.08 | 11.22 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 8.05 | 3.17 |
| Solyc02g069880.2.1 | Tomato | cytosol | 5.75 | 2.48 |
| CDY67278 | Canola | cytosol | 2.3 | 2.47 |
| Solyc03g042520.1.1 | Tomato | nucleus | 8.05 | 2.26 |
| Solyc03g034460.2.1 | Tomato | nucleus | 8.05 | 1.94 |
| Solyc03g042550.1.1 | Tomato | nucleus | 8.05 | 1.94 |
| Solyc03g034450.2.1 | Tomato | nucleus | 6.9 | 1.53 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR008974 | UniProt:K4C4B8 | PFAM:PF03145 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF42 | InterPro:SINA-like | SUPFAM:SSF49599 | EnsemblPlantsGene:Solyc06g017910.1 | EnsemblPlants:Solyc06g017910.1.1 | InterPro:TRAF-like |
| UniParc:UPI000276747F | : | : | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4C4B8]
Coordinates
chr6:-:15425017..15425280
Molecular Weight (calculated)
10557.8 Da
IEP (calculated)
10.348
GRAVY (calculated)
-0.439
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MARIYMAFLH FLGQETDAQN NTYILEVGGN RRKRIREGTP SSIRYNHRKF WDRHDCLVIQ RNMDLFFFKG DIQVPTLKWE ALIWILR
001: METDSIDSVI DDDEIHQKHQ FSSTKSQGGA TVVISPATSV YELLECPVCT NSMYPPIHQV FQCFGQYFCL HFEAFQLGMA PVYMAFLRFM GDEDDARNYT
101: YSLEVGGSGR KQTWEGTPRS VRDSHRKVRD SHDGLIIQRN MALFFSGGDK KELKLRVTGR IWKEQQNPDS GVCITSMCSS
101: YSLEVGGSGR KQTWEGTPRS VRDSHRKVRD SHDGLIIQRN MALFFSGGDK KELKLRVTGR IWKEQQNPDS GVCITSMCSS
Arabidopsis Description
TRAF-like superfamily protein [Source:TAIR;Acc:AT5G53360]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.