Factsheet for Solyc05g050580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018049	Potato	nucleus	99.09	98.5
Solyc01g096020.2.1	Tomato	cytosol	86.4	85.89
VIT_02s0025g01660.t01	Wine grape	cytosol	81.27	85.13
Solyc10g009420.2.1	Tomato	nucleus	81.27	85.13
Solyc06g051980.2.1	Tomato	cytosol	80.66	84.76
Solyc03g083270.2.1	Tomato	cytosol	79.76	84.34
KRG97189	Soybean	nucleus	77.64	81.85
GSMUA_Achr5P06970_001	Banana	cytosol	75.83	77.47
KRH68916	Soybean	nucleus	76.13	76.83
Solyc01g006190.2.1	Tomato	cytosol	60.73	65.26
Solyc02g069880.2.1	Tomato	cytosol	38.97	63.86
Solyc10g080570.1.1	Tomato	cytosol	55.89	61.06
VIT_15s0046g00400.t01	Wine grape	cytosol	47.73	58.52
VIT_00s0426g00040.t01	Wine grape	mitochondrion	41.09	56.43
VIT_15s0046g00390.t01	Wine grape	nucleus	44.71	55.02
Solyc06g017910.1.1	Tomato	cytosol	13.9	52.87
VIT_15s0046g00410.t01	Wine grape	cytosol	28.7	52.49
VIT_00s0726g00020.t01	Wine grape	extracellular	16.62	47.83
VIT_15s0046g00380.t01	Wine grape	cytosol	35.65	47.39
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.11	47.17
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.71	23.53
Solyc03g034460.2.1	Tomato	nucleus	19.03	17.5
Solyc03g034450.2.1	Tomato	nucleus	19.94	16.84
Solyc03g042550.1.1	Tomato	nucleus	18.13	16.67
Solyc03g042520.1.1	Tomato	nucleus	14.8	15.81

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:K4C190
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc05g050580.2	EnsemblPlants:Solyc05g050580.2.1	InterPro:TRAF-like	UniParc:UPI0002767220
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4C190]

Coordinates

chr5:+:60738283..60742877

Molecular Weight (calculated)

37315.1 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.454

Length

331 amino acids

Sequence
(BLAST)

001: MELDSIECVS SSDGMIDDDE IPLHHPHIIH SQYSSSKTSN NNNINNSSSN NDGIAAIHST TSVHELLECP VCTNSMYPPI HQCHNGHTIC STCKARAHNR
101: CPTCRQELGD IRCLALEKVA ESLELPCKYG SVGCPEIFPY YSKLKHESVC NFRPYSCPYA GSECSVVGDI PYLVTHLRDD HKVDMHSGCT FNHRYVKSNP
201: REVENATWML TVFNCFGQCF CLHFEAFQLG TAPVYMAFLR FMGDEMEARN YSYSLEVGGN GRKLTWEGTP RSIRDSHRKV RDSHDGLVIQ RNMALFFSGG
301: ERKELKLRVT GRIWKEQQNL DGGACMPNLC T

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.