Factsheet for Solyc06g051980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050427	Potato	cytosol	98.1	98.1
Solyc03g083270.2.1	Tomato	cytosol	90.16	90.73
VIT_02s0025g01660.t01	Wine grape	cytosol	85.71	85.44
Solyc10g009420.2.1	Tomato	nucleus	83.17	82.91
Solyc05g050580.2.1	Tomato	nucleus	84.76	80.66
GSMUA_Achr5P06970_001	Banana	cytosol	82.54	80.25
Solyc01g096020.2.1	Tomato	cytosol	84.76	80.18
CDX92848	Canola	nucleus	77.46	80.0
AT4G27880.1	Thale cress	nucleus	80.63	77.68
Bra010392.1-P	Field mustard	nucleus	78.73	77.5
CDY14268	Canola	nucleus	78.73	77.5
CDY19018	Canola	nucleus	79.05	77.33
CDX89221	Canola	nucleus	79.05	77.33
Bra026301.1-P	Field mustard	nucleus	79.05	77.33
CDX97399	Canola	nucleus	78.41	76.95
Solyc01g006190.2.1	Tomato	cytosol	64.13	65.58
Solyc02g069880.2.1	Tomato	cytosol	41.59	64.85
Solyc10g080570.1.1	Tomato	cytosol	58.41	60.73
Solyc06g017910.1.1	Tomato	cytosol	15.87	57.47
VIT_15s0046g00400.t01	Wine grape	cytosol	49.21	57.41
VIT_00s0426g00040.t01	Wine grape	mitochondrion	42.22	55.19
VIT_15s0046g00390.t01	Wine grape	nucleus	45.71	53.53
VIT_15s0046g00410.t01	Wine grape	cytosol	29.84	51.93
VIT_00s0726g00020.t01	Wine grape	extracellular	17.14	46.96
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.56	46.23
VIT_15s0046g00380.t01	Wine grape	cytosol	36.51	46.18
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.51	23.53
Solyc03g034460.2.1	Tomato	nucleus	20.63	18.06
Solyc03g034450.2.1	Tomato	nucleus	21.9	17.6
Solyc03g042550.1.1	Tomato	nucleus	19.68	17.22
Solyc03g042520.1.1	Tomato	nucleus	15.24	15.48

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:K4C5Y4
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g051980.2	EnsemblPlants:Solyc06g051980.2.1	InterPro:TRAF-like	UniParc:UPI0002767291
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4C5Y4]

Coordinates

chr6:-:35650706..35656150

Molecular Weight (calculated)

35775.7 Da

IEP (calculated)

6.765

GRAVY (calculated)

-0.392

Length

315 amino acids

Sequence
(BLAST)

001: MEMDSVECVS LMDGVEDEEI QSSIASHQYP LGKPNNILSA GNVPTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKTR VHNRCPTCRQ ELGDIRCLAL
101: EKVAESLELP CKYFSLGCPE IFPYYSKLKH ETLCNFRPYS CPYAGSECSV TGDIPYLVTH LRDDHKVDMH TGCTFNHRYV KSNPREVENA TWMLTVFHCF
201: GQYFCLHFEA FQLGVAPVYM AFLRFMGDET DARNYSYSLE VGGNGRKLIW EGTPRSIRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK LRVTGRIWKE
301: QQNQDGGVCI PNLGS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.