Factsheet for Bra026301.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89221	Canola	nucleus	100.0	100.0
CDY19018	Canola	nucleus	99.07	99.07
Bra010392.1-P	Field mustard	nucleus	91.93	92.5
AT4G27880.1	Thale cress	nucleus	90.68	89.3
VIT_02s0025g01660.t01	Wine grape	cytosol	80.12	81.65
PGSC0003DMT400023575	Potato	cytosol	79.19	81.21
Solyc03g083270.2.1	Tomato	cytosol	78.88	81.15
PGSC0003DMT400050427	Potato	cytosol	77.95	79.68
Solyc06g051980.2.1	Tomato	cytosol	77.33	79.05
Bra003473.1-P	Field mustard	nucleus	76.71	77.67
KRG97189	Soybean	nucleus	75.47	77.39
GSMUA_Achr5P06970_001	Banana	cytosol	77.33	76.85
Bra014421.1-P	Field mustard	cytosol	74.53	75.0
KRH68916	Soybean	nucleus	74.22	72.87
Bra008328.1-P	Field mustard	cytosol	23.29	69.44
Bra014589.1-P	Field mustard	nucleus	62.73	69.18
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	55.59	68.85
Bra016898.1-P	Field mustard	cytosol	63.04	66.56
Bra000249.1-P	Field mustard	nucleus	62.42	65.47
Bra007376.1-P	Field mustard	cytosol	51.86	60.51
VIT_15s0046g00400.t01	Wine grape	cytosol	46.27	55.19
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.68	54.36
Bra001519.1-P	Field mustard	nucleus	34.78	52.34
VIT_15s0046g00390.t01	Wine grape	nucleus	43.48	52.04
VIT_15s0046g00410.t01	Wine grape	cytosol	28.26	50.28
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.22	46.23
VIT_15s0046g00380.t01	Wine grape	cytosol	35.09	45.38
VIT_00s0726g00020.t01	Wine grape	extracellular	16.15	45.22
Bra018266.1-P	Field mustard	plastid	21.74	24.22
Bra025434.1-P	Field mustard	nucleus	20.5	23.24
Bra012354.1-P	Field mustard	cytosol	18.32	21.69
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.7	21.19
Bra028395.1-P	Field mustard	nucleus	21.12	20.99
Bra000425.1-P	Field mustard	nucleus	18.32	20.85
Bra022858.1-P	Field mustard	nucleus	19.25	20.39
Bra004176.1-P	Field mustard	nucleus	19.88	18.99
Bra004402.1-P	Field mustard	nucleus	17.08	17.35
Bra019710.1-P	Field mustard	nucleus	18.01	16.96
Bra004174.1-P	Field mustard	nucleus	18.32	16.71

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra026301	EnsemblPlants:Bra026301.1
EnsemblPlants:Bra026301.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M4EBZ2
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002543F21	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

AT4G27880 (E=3e-175) | seven in absentia (SINA) family protein

Coordinates

chrA01:+:10137125..10138294

Molecular Weight (calculated)

36217.1 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.381

Length

322 amino acids

Sequence
(BLAST)

001: MDMDSMESST RSVQNDEIHH NGTFHFSSTK SHGGGGAASP AVVTNIVGPT ATSVYELLEC PVCTCSMYPP IHQCHNGHTL CSTCKVRVHN RCPTCRQELG
101: DIRCLALEKV AESLELPCKF YNLGCPEIFP YYSKLKHESL CNFRPYGCPY AGSECGVVGD IPFLVSHLRD DHKVDMHAGS TFNHRYVKSN PREVENATWM
201: LTVFHCFGQY FCLHFEAFQL GMGPVYMAFL RFMGDEEEAR SYSYSLEVGG SGRKLTWEGT PRSIRDSHRK VRDSNDGLII QRNMALFFSG GDRKELKLRV
301: TGKIWKEQHS PDSGLFMPNL SS

Best Arabidopsis Sequence Match ( AT4G27880.1 )
(BLAST)

001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS

Arabidopsis Description

SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.