Factsheet for Bra000249.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35390	Canola	nucleus	100.0	100.0
Bra008328.1-P	Field mustard	cytosol	33.55	95.37
Bra016898.1-P	Field mustard	cytosol	86.32	86.89
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	70.68	83.46
Bra014589.1-P	Field mustard	nucleus	76.87	80.82
VIT_08s0007g06740.t01	Wine grape	cytosol	79.8	77.78
PGSC0003DMT400060947	Potato	cytosol	58.96	73.88
PGSC0003DMT400060943	Potato	cytosol	58.96	73.88
Bra007376.1-P	Field mustard	cytosol	65.8	73.19
KRH67087	Soybean	nucleus	76.55	69.53
KRG95412	Soybean	nucleus	76.55	68.71
Solyc10g080570.1.1	Tomato	cytosol	64.82	65.68
Bra003473.1-P	Field mustard	nucleus	66.78	64.47
Bra014421.1-P	Field mustard	cytosol	66.45	63.75
Bra010392.1-P	Field mustard	nucleus	65.47	62.81
Bra026301.1-P	Field mustard	nucleus	65.47	62.42
Bra001519.1-P	Field mustard	nucleus	37.78	54.21
Bra018266.1-P	Field mustard	plastid	21.17	22.49
Bra012354.1-P	Field mustard	cytosol	19.54	22.06
Bra025434.1-P	Field mustard	nucleus	19.87	21.48
Bra022858.1-P	Field mustard	nucleus	21.17	21.38
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.92	20.45
Bra028395.1-P	Field mustard	nucleus	20.85	19.75
Bra000425.1-P	Field mustard	nucleus	17.92	19.43
Bra004176.1-P	Field mustard	nucleus	19.87	18.1
Bra004402.1-P	Field mustard	nucleus	17.92	17.35
Bra004174.1-P	Field mustard	nucleus	19.87	17.28
Bra019710.1-P	Field mustard	nucleus	17.92	16.08

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra000249	EnsemblPlants:Bra000249.1
EnsemblPlants:Bra000249.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M4C7S1
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00025403B1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

AT2G41980 (E=2e-165) | seven in absentia (SINA) family protein

Coordinates

chrA03:-:10135259..10136368

Molecular Weight (calculated)

34760.5 Da

IEP (calculated)

7.898

GRAVY (calculated)

-0.454

Length

307 amino acids

Sequence
(BLAST)

001: MAPGGTTYKE ALESNWIGLD YEVRMSKVEA TNKPAKSASG AIGKIRSSNG SGVHELLECP VCTNLMYPPI NQCPNGHTLC SSCKQQVQNT CPTCRYELGN
101: IRCLALEKVA ESLEVSCRYQ SLGCHDIFPY YSKVKHEQHC RFRSYDCPYA GSECSVTGDI PTLVEHLKVD HKVDMHSGCT FNHRYVKSNP QEVENATWML
201: TVFNCFGRQF CLHFEAFQLG TAPVYMAFLR FMGDENEAKK FSYSLEVGAH SRKLTWQGIP RSIRDGHKKV RDSQDGLIIP RNMALFFSGS DKEELKLRVT
301: GRIWREE

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.