Factsheet for Bra016898.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06889	Canola	cytosol	95.08	97.64
Bra008328.1-P	Field mustard	cytosol	31.8	89.81
AT2G41980.1	Thale cress	nucleus	88.85	88.85
Bra000249.1-P	Field mustard	nucleus	86.89	86.32
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	72.46	85.0
Bra014589.1-P	Field mustard	nucleus	78.69	82.19
VIT_08s0007g06740.t01	Wine grape	cytosol	79.67	77.14
Bra007376.1-P	Field mustard	cytosol	67.87	75.0
PGSC0003DMT400060947	Potato	cytosol	58.69	73.06
PGSC0003DMT400060943	Potato	cytosol	58.69	73.06
KRH67087	Soybean	nucleus	76.72	69.23
KRG95412	Soybean	nucleus	76.72	68.42
Bra003473.1-P	Field mustard	nucleus	67.21	64.47
Bra010392.1-P	Field mustard	nucleus	66.89	63.75
Solyc10g080570.1.1	Tomato	cytosol	63.28	63.7
Bra014421.1-P	Field mustard	cytosol	66.23	63.12
Bra026301.1-P	Field mustard	nucleus	66.56	63.04
Bra001519.1-P	Field mustard	nucleus	37.38	53.27
Bra018266.1-P	Field mustard	plastid	21.97	23.18
Bra025434.1-P	Field mustard	nucleus	20.66	22.18
Bra012354.1-P	Field mustard	cytosol	19.34	21.69
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	18.36	20.82
Bra022858.1-P	Field mustard	nucleus	20.66	20.72
Bra000425.1-P	Field mustard	nucleus	19.02	20.49
Bra028395.1-P	Field mustard	nucleus	20.98	19.75
Bra004176.1-P	Field mustard	nucleus	19.67	17.8
Bra004174.1-P	Field mustard	nucleus	20.0	17.28
Bra004402.1-P	Field mustard	nucleus	17.7	17.03
Bra019710.1-P	Field mustard	nucleus	18.03	16.08

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra016898	EnsemblPlants:Bra016898.1
EnsemblPlants:Bra016898.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016567
GO:GO:0019538	GO:GO:0046872	GO:GO:2000785	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	UniProt:M4DK70	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00025438D0
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

AT2G41980 (E=1e-162) | seven in absentia (SINA) family protein

Coordinates

chrA04:-:17705674..17707013

Molecular Weight (calculated)

34822.6 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.453

Length

305 amino acids

Sequence
(BLAST)

001: MAPPGGNTFK ESNSTGLDYE VKMSKVETNN KPARSASVSF RKYGIHSSNG VYELLECLAC TNLMYPPIFQ CPNGHTLCST CKLKVHNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQSL GCHDIFPYYS KLKHEQHCRF RSYNCPYAGS ECSVAGDIQT LVDHLKDDHK VDMHDGCTFN HRYVKSNPLE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGTA PVYMAFLRFM GDEKEAKKFS YSLEVGAHSC KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN MALYFSGSDK EELKLRVTGR
301: IWKEE

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.