Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016898.1-P | Field mustard | cytosol | 97.64 | 95.08 |
| CDY64066 | Canola | cytosol | 33.67 | 92.59 |
| CDY14808 | Canola | cytosol | 93.6 | 92.05 |
| AT2G41980.1 | Thale cress | nucleus | 90.91 | 88.52 |
| CDY57244 | Canola | cytosol | 89.23 | 86.04 |
| CDY22549 | Canola | nucleus | 89.23 | 85.76 |
| CDX71977 | Canola | cytosol | 88.89 | 85.16 |
| CDY56244 | Canola | cytosol | 82.83 | 85.12 |
| CDY35390 | Canola | nucleus | 87.88 | 85.02 |
| CDY67927 | Canola | cytosol | 88.89 | 84.89 |
| CDY06056 | Canola | cytosol | 74.75 | 84.73 |
| CDX88968 | Canola | cytosol | 88.55 | 84.57 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 81.82 | 77.14 |
| PGSC0003DMT400060947 | Potato | cytosol | 60.94 | 73.88 |
| PGSC0003DMT400060943 | Potato | cytosol | 60.94 | 73.88 |
| CDY67278 | Canola | cytosol | 19.19 | 70.37 |
| CDY67899 | Canola | cytosol, plastid | 38.72 | 69.28 |
| KRH67087 | Soybean | nucleus | 78.79 | 69.23 |
| KRG95412 | Soybean | nucleus | 78.79 | 68.42 |
| CDX92848 | Canola | nucleus | 66.67 | 64.92 |
| Solyc10g080570.1.1 | Tomato | cytosol | 64.98 | 63.7 |
| CDX67865 | Canola | nucleus | 69.02 | 63.47 |
| CDY25077 | Canola | nucleus | 69.02 | 63.47 |
| CDY14268 | Canola | nucleus | 68.01 | 63.12 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 58.59 | 63.04 |
| CDY19018 | Canola | nucleus | 68.01 | 62.73 |
| CDX89221 | Canola | nucleus | 68.01 | 62.73 |
| CDX97399 | Canola | nucleus | 67.34 | 62.31 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 46.13 | 61.99 |
| CDY43950 | Canola | nucleus | 67.68 | 61.85 |
| CDX89132 | Canola | cytosol | 67.68 | 61.66 |
| CDY38819 | Canola | nucleus | 39.73 | 60.82 |
| CDX75727 | Canola | cytosol | 39.06 | 54.21 |
| CDX82523 | Canola | cytosol | 39.06 | 54.21 |
| CDY11709 | Canola | nucleus | 15.49 | 27.88 |
| CDX99687 | Canola | nucleus | 21.21 | 22.26 |
| CDY52473 | Canola | nucleus | 21.21 | 22.18 |
| CDY10787 | Canola | plastid | 21.55 | 22.15 |
| CDY01699 | Canola | nucleus, plastid | 19.87 | 20.92 |
| CDY36209 | Canola | plastid | 14.48 | 20.38 |
| CDY25763 | Canola | nucleus | 18.52 | 20.22 |
| CDY12498 | Canola | nucleus | 18.18 | 19.85 |
| CDY27008 | Canola | nucleus | 21.21 | 19.15 |
| CDY47873 | Canola | nucleus | 20.88 | 19.14 |
| CDY01695 | Canola | nucleus | 19.87 | 19.09 |
| CDX96138 | Canola | nucleus | 21.21 | 18.53 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.52 | 18.52 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.85 | 18.03 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.77 | 17.88 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 20.54 | 17.48 |
| CDY36211 | Canola | nucleus | 21.21 | 17.45 |
| CDY70665 | Canola | nucleus | 17.17 | 15.74 |
| CDY01757 | Canola | cytosol | 2.02 | 11.32 |
| CDY01758 | Canola | cytosol | 12.46 | 8.47 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 |
| InterPro:7-in-absentia-prot_TRAF-dom | GO:A0A078F1X8 | EnsemblPlants:CDY06889 | ProteinID:CDY06889 | ProteinID:CDY06889.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00123175001 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 |
| InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EE5D03 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : |
Description
BnaA04g24260D
Coordinates
chrLK031974:+:33918..36148
Molecular Weight (calculated)
33970.6 Da
IEP (calculated)
7.739
GRAVY (calculated)
-0.459
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPGGNAFK ESNSTGLDYE VKMSKVEANN KPARYGIHSS NGVYELLDCL VCTNLMYPPI YQCPNGHTLC SNCKLRVHNT CPTCRYELGN IRCLALEKVA
101: ESLEVPCRYQ SLGCHDIFPY YSKLKHEQHC RFRSYNCPYA GSECSVAGDI QTLVDHLKDD HKVDMHDGCT FNHRYVKSNP LEVENATWML TVFNCFGRQF
201: CLHFEAFQLG TAPVYMAFLR FMGDEKEAKK FSYSLEVGAH SCKLTWQGIP RSIRDSHRKV RDSQDGLIIP RNMALYFSGS DKEELKLRVT GRIWKEE
101: ESLEVPCRYQ SLGCHDIFPY YSKLKHEQHC RFRSYNCPYA GSECSVAGDI QTLVDHLKDD HKVDMHDGCT FNHRYVKSNP LEVENATWML TVFNCFGRQF
201: CLHFEAFQLG TAPVYMAFLR FMGDEKEAKK FSYSLEVGAH SCKLTWQGIP RSIRDSHRKV RDSQDGLIIP RNMALYFSGS DKEELKLRVT GRIWKEE
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.