Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004174.1-P | Field mustard | nucleus | 97.42 | 96.32 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 46.99 | 55.78 |
| CDY36209 | Canola | plastid | 32.95 | 54.5 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 46.13 | 54.21 |
| AT1G66630.1 | Thale cress | cytosol | 44.99 | 51.82 |
| CDY11709 | Canola | nucleus | 23.78 | 50.3 |
| CDX99687 | Canola | nucleus | 37.54 | 46.29 |
| CDY52473 | Canola | nucleus | 37.25 | 45.77 |
| CDY01699 | Canola | nucleus, plastid | 36.96 | 45.74 |
| CDY10787 | Canola | plastid | 36.39 | 43.94 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 22.06 | 43.02 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 11.17 | 42.86 |
| CDY01757 | Canola | cytosol | 6.3 | 41.51 |
| CDY12498 | Canola | nucleus | 31.81 | 40.81 |
| CDY25763 | Canola | nucleus | 31.52 | 40.44 |
| CDY47873 | Canola | nucleus | 35.82 | 38.58 |
| CDY27008 | Canola | nucleus | 36.1 | 38.3 |
| CDY01695 | Canola | nucleus | 33.81 | 38.19 |
| CDY70665 | Canola | nucleus | 31.23 | 33.64 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 19.48 | 31.78 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.77 | 31.22 |
| KRH42263 | Soybean | nucleus | 27.51 | 30.0 |
| KRH58384 | Soybean | nucleus | 27.22 | 29.69 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 22.64 | 28.73 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 24.64 | 28.67 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 20.63 | 28.57 |
| CDX96138 | Canola | nucleus | 27.79 | 28.53 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.33 | 28.5 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 21.49 | 28.2 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 22.06 | 28.1 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 21.78 | 27.74 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 24.36 | 27.69 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 22.35 | 27.66 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 22.06 | 27.4 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 21.49 | 27.37 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 21.49 | 27.27 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.33 | 27.17 |
| CDY36211 | Canola | nucleus | 28.08 | 27.15 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 22.35 | 26.9 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 20.92 | 26.64 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 21.2 | 26.62 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 21.49 | 26.6 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 21.49 | 26.6 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 20.06 | 26.42 |
| Solyc03g042550.1.1 | Tomato | nucleus | 27.22 | 26.39 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 20.63 | 26.28 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 21.2 | 26.24 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 26.36 | 26.14 |
| Solyc03g034460.2.1 | Tomato | nucleus | 26.93 | 26.11 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 21.2 | 26.06 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 21.49 | 25.68 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 21.2 | 25.26 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 19.2 | 25.19 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 21.49 | 25.08 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 24.07 | 24.78 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 19.48 | 24.73 |
| KXG32009 | Sorghum | nucleus | 20.92 | 24.66 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 20.63 | 24.66 |
| Solyc03g042520.1.1 | Tomato | nucleus | 21.78 | 24.52 |
| PGSC0003DMT400043050 | Potato | nucleus | 26.65 | 24.41 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 23.21 | 24.4 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 18.62 | 24.25 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 19.2 | 24.19 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 18.62 | 24.16 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 20.63 | 24.0 |
| KXG37941 | Sorghum | cytosol | 19.2 | 23.93 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 22.35 | 23.78 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 19.77 | 23.63 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 22.64 | 23.58 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 22.35 | 23.57 |
| Zm00001d041049_P001 | Maize | nucleus | 22.06 | 23.55 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 20.63 | 23.45 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 22.35 | 23.21 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.92 | 23.17 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 17.77 | 23.05 |
| Solyc03g034450.2.1 | Tomato | nucleus | 25.79 | 22.96 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 22.35 | 22.94 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 16.62 | 22.92 |
| OQU78944 | Sorghum | nucleus | 21.2 | 22.7 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.05 | 22.67 |
| CDY01758 | Canola | cytosol | 28.37 | 22.65 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 22.06 | 22.65 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 21.78 | 22.35 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.61 | 22.0 |
| KXG32014 | Sorghum | nucleus | 13.75 | 21.82 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 17.48 | 21.79 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.48 | 21.71 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 17.19 | 21.43 |
| EES00387 | Sorghum | nucleus | 19.48 | 21.32 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 21.78 | 21.23 |
| CDY67278 | Canola | cytosol | 4.87 | 20.99 |
| CDY06889 | Canola | cytosol | 17.48 | 20.54 |
| OQU77422 | Sorghum | cytosol | 16.62 | 20.28 |
| CDY35390 | Canola | nucleus | 17.77 | 20.2 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 26.36 | 20.18 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 18.91 | 20.0 |
| CDY14808 | Canola | cytosol | 17.19 | 19.87 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 26.07 | 19.83 |
| CDY57244 | Canola | cytosol | 17.48 | 19.81 |
| CDY22549 | Canola | nucleus | 17.48 | 19.74 |
| CDX92848 | Canola | nucleus | 17.19 | 19.67 |
| CDX97399 | Canola | nucleus | 18.05 | 19.63 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 25.79 | 19.4 |
| CDX71977 | Canola | cytosol | 17.19 | 19.35 |
| CDX88968 | Canola | cytosol | 17.19 | 19.29 |
| CDY67927 | Canola | cytosol | 17.19 | 19.29 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 18.05 | 19.27 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 16.33 | 19.19 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 16.33 | 18.94 |
| CDX67865 | Canola | nucleus | 17.48 | 18.89 |
| CDY25077 | Canola | nucleus | 17.48 | 18.89 |
| CDY43950 | Canola | nucleus | 17.48 | 18.77 |
| CDY56244 | Canola | cytosol | 15.47 | 18.69 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 15.76 | 18.52 |
| EES17731 | Sorghum | nucleus | 18.34 | 18.5 |
| CDY14268 | Canola | nucleus | 16.91 | 18.44 |
| TraesCSU01G045900.1 | Wheat | cytosol | 15.76 | 18.39 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 18.62 | 18.36 |
| CDX89221 | Canola | nucleus | 16.91 | 18.32 |
| CDY19018 | Canola | nucleus | 16.91 | 18.32 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 15.47 | 18.18 |
| CDX89132 | Canola | cytosol | 16.91 | 18.1 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 19.48 | 17.8 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 14.33 | 17.54 |
| OQU86453 | Sorghum | cytosol | 10.6 | 17.29 |
| CDY06056 | Canola | cytosol | 12.89 | 17.18 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 19.77 | 17.04 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 17.77 | 16.99 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 17.77 | 16.99 |
| TraesCSU01G021700.1 | Wheat | nucleus | 17.77 | 16.99 |
| KXG21322 | Sorghum | nucleus | 18.05 | 16.84 |
| OQU77425 | Sorghum | nucleus | 18.05 | 16.76 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 17.48 | 16.35 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 17.48 | 16.27 |
| HORVU2Hr1G118840.1 | Barley | plastid | 17.19 | 16.17 |
| TraesCS1A01G070000.1 | Wheat | plastid | 11.17 | 16.05 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 16.91 | 15.73 |
| TraesCSU01G231400.1 | Wheat | nucleus | 15.47 | 15.61 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 15.19 | 15.54 |
| EES17735 | Sorghum | mitochondrion | 19.77 | 15.37 |
| CDY38819 | Canola | nucleus | 8.31 | 14.95 |
| CDX75727 | Canola | cytosol | 8.6 | 14.02 |
| CDX82523 | Canola | cytosol | 8.31 | 13.55 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 10.32 | 13.04 |
| EES02574 | Sorghum | nucleus | 16.33 | 12.72 |
| CDY64066 | Canola | cytosol | 3.72 | 12.04 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 7.45 | 11.76 |
| CDY67899 | Canola | cytosol, plastid | 4.58 | 9.64 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.15 | 4.04 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078E2L9 | EnsemblPlants:CDX96140 | ProteinID:CDX96140 | ProteinID:CDX96140.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00102197001 |
| InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniPathway:UPA00143 | UniParc:UPI0004EDEDC0 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg |
Description
BnaA07g25910D
Coordinates
chrLK031892:+:1279979..1281377
Molecular Weight (calculated)
38916.7 Da
IEP (calculated)
5.037
GRAVY (calculated)
-0.532
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MKETNAAGEA SSSLRRHRKR QRLPSVENGR ETASVDGDEV IPEARSGTLL DLDLLDCPVC FQALTQHVFQ CDNGHIACSS CCRELRNKCP ACALPIGNNR
101: CRIMERVVES VTVPCPNAKH GCTEKFSYGK ELAHEKECRF ALCYCPAPDC NYAGVYKDLY THYDANHKDT STRFVCGTLH RTYLGTVSTT SVLQEYRDGP
201: LVVVQGFVVA HGLSVTVNCI APSAPGVGKF SFNLTYTLGR HTVTFGSTEM NRIQKVSLET PQSDFMSIPS YLVSPIIVKN LRICIRRLEE EAGEDEEEEE
301: AEEEEEAGEE EEEAGEEEEE EAVEVDVVNN VRRSTRQKKG NSKYQNKVK
101: CRIMERVVES VTVPCPNAKH GCTEKFSYGK ELAHEKECRF ALCYCPAPDC NYAGVYKDLY THYDANHKDT STRFVCGTLH RTYLGTVSTT SVLQEYRDGP
201: LVVVQGFVVA HGLSVTVNCI APSAPGVGKF SFNLTYTLGR HTVTFGSTEM NRIQKVSLET PQSDFMSIPS YLVSPIIVKN LRICIRRLEE EAGEDEEEEE
301: AEEEEEAGEE EEEAGEEEEE EAVEVDVVNN VRRSTRQKKG NSKYQNKVK
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.