CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91893
EES03677
EES05173
KXG29172
OQU84058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37890.1	EES03677	AT2G27580.1	21798944
AT5G37890.1	EES05173	AT2G27580.1	21798944
AT5G37890.1	EER91893	AT5G65940.1	21798944
AT5G37890.1	KXG29172	AT5G65940.1	21798944
AT5G37890.1	OQU84058	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77414	Sorghum	mitochondrion, nucleus	66.58	70.34
OQU77425	Sorghum	nucleus	59.63	59.31
EES17731	Sorghum	nucleus	41.44	44.8
OQU77422	Sorghum	cytosol	31.82	41.61
EES17728	Sorghum	cytosol, mitochondrion, nucleus	36.1	41.28
Os05t0152900-00	Rice	nucleus	43.58	40.75
KXG32008	Sorghum	cytosol, nucleus, plastid	25.94	36.47
Os05t0152600-00	Rice	mitochondrion	45.19	32.88
KXG37942	Sorghum	cytosol, nucleus, plastid	22.73	31.95
KXG32009	Sorghum	nucleus	24.6	31.08
EES17735	Sorghum	mitochondrion	34.76	28.95
TraesCS1D01G102900.1	Wheat	nucleus	28.61	28.01
CDY11709	Canola	nucleus	12.03	27.27
KXG37941	Sorghum	cytosol	20.32	27.14
KXG32011	Sorghum	cytosol	16.84	25.93
Bra012354.1-P	Field mustard	cytosol	18.72	25.74
CDY25763	Canola	nucleus	18.72	25.74
CDY12498	Canola	nucleus	18.72	25.74
CDY36209	Canola	plastid	14.17	25.12
EES00387	Sorghum	nucleus	21.12	24.76
KXG32014	Sorghum	nucleus	14.17	24.09
KXG32010	Sorghum	extracellular	15.51	23.67
CDX99687	Canola	nucleus	17.65	23.32
Bra025434.1-P	Field mustard	nucleus	17.65	23.24
VIT_14s0006g01870.t01	Wine grape	cytosol	12.3	23.0
OQU86453	Sorghum	cytosol	13.1	22.9
AT5G37870.1	Thale cress	nucleus	17.11	22.78
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	13.37	22.62
CDY52473	Canola	nucleus	17.11	22.54
KRH58384	Soybean	nucleus	19.25	22.5
Bra018266.1-P	Field mustard	plastid	17.38	22.49
CDY10787	Canola	plastid	17.38	22.49
AT5G37910.1	Thale cress	nucleus	16.31	22.1
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	15.78	21.93
KRH42263	Soybean	nucleus	18.72	21.88
PGSC0003DMT400043047	Potato	cytosol	10.7	21.74
AT5G37900.1	Thale cress	nucleus	13.9	21.58
AT1G66620.1	Thale cress	nucleus	17.91	21.41
Bra000425.1-P	Field mustard	nucleus	16.04	21.2
Bra022858.1-P	Field mustard	nucleus	17.11	21.05
AT5G37890.1	Thale cress	nucleus	16.04	20.98
CDX95911	Canola	cytosol, nucleus, plastid	16.31	20.75
CDY47873	Canola	nucleus	17.91	20.68
CDY01699	Canola	nucleus, plastid	15.51	20.57
CDY01756	Canola	cytosol, nucleus, plastid	16.31	20.54
Bra028395.1-P	Field mustard	nucleus	17.65	20.37
CDY01695	Canola	nucleus	16.58	20.06
CDY27008	Canola	nucleus	17.65	20.06
OQU86460	Sorghum	nucleus	17.65	19.76
OQU78944	Sorghum	nucleus	17.11	19.63
AT1G66630.1	Thale cress	cytosol	15.78	19.47
Bra004402.1-P	Field mustard	nucleus	16.31	19.24
CDX83363	Canola	cytosol, nucleus, plasma membrane	9.09	18.99
AT5G62800.1	Thale cress	nucleus	17.65	18.97
AT1G66650.1	Thale cress	nucleus	16.58	18.84
KXG32028	Sorghum	plastid	16.84	18.75
OQU84285	Sorghum	cytosol	15.51	18.65
AT5G37930.1	Thale cress	nucleus	17.38	18.62
Solyc03g034460.2.1	Tomato	nucleus	17.91	18.61
KXG32085	Sorghum	nucleus	11.23	18.58
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	16.04	18.4
PGSC0003DMT400043050	Potato	nucleus	18.72	18.37
EES02573	Sorghum	cytosol	17.11	18.34
CDY70665	Canola	nucleus	15.78	18.21
AT1G66660.2	Thale cress	nucleus	16.84	18.1
Solyc03g042550.1.1	Tomato	nucleus	17.38	18.06
CDX96140	Canola	cytosol, nucleus, plastid	16.84	18.05
EES02178	Sorghum	cytosol, nucleus, peroxisome	14.71	17.92
EER92255	Sorghum	nucleus	14.44	17.88
Bra004174.1-P	Field mustard	nucleus	16.84	17.85
Solyc03g042520.1.1	Tomato	nucleus	14.44	17.42
CDX96138	Canola	nucleus	15.78	17.35
EER97677	Sorghum	cytosol	13.9	17.22
Bra004176.1-P	Field mustard	nucleus	15.51	17.21
Solyc03g034450.2.1	Tomato	nucleus	17.91	17.09
Bra019710.1-P	Field mustard	nucleus	15.51	16.96
OQU86439	Sorghum	cytosol, mitochondrion, plastid	11.76	16.54
EES06707	Sorghum	nucleus	14.97	16.28
EES19270	Sorghum	cytosol, nucleus, peroxisome	15.24	16.15
AT1G66610.1	Thale cress	nucleus	15.51	15.85
CDY36211	Canola	nucleus	15.24	15.79
KXG32019	Sorghum	nucleus, plastid	15.51	15.59
EES02574	Sorghum	nucleus	17.11	14.29
KXG30435	Sorghum	cytosol	3.21	11.76
KXG22272	Sorghum	cytosol	3.21	11.76
CDY01757	Canola	cytosol	1.6	11.32
KXG19745	Sorghum	extracellular	2.41	9.38
CDY01758	Canola	cytosol	10.7	9.15

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1B6P6R7	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	EnsemblPlants:KXG21322	ProteinID:KXG21322	ProteinID:KXG21322.1	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF35	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3009G047700	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI00081ACF6C	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:4521702..4524548

Molecular Weight (calculated)

40761.0 Da

IEP (calculated)

6.861

GRAVY (calculated)

-0.282

Length

374 amino acids

Sequence
(BLAST)

001: MAARTVSSRR QLYSFFLADD LMSSKRKKKS QDNGGGTCRI ESNVDDFLED DEEGSHEPAS AAAAAAAPDV RARTRTAVAN VTVGDADALD CGVCFLALRP
101: PIFQCEVGHV VCSACRDKLE ATGNGVCHVC GVATHGYRRC HAMEQLLDCI RVPCSYSAHG CDTMPPYHGQ ESHRQVCRHA PCHCPGESCG FVGSTAALLD
201: HFAGAHNWPC TTKVRARETF SIRLHVGFNF FLLQDNGRSD GEQAFPVPRL FLMNVTRERL GRAISVLCIH PHASTTTAAN GAQELSLTQC ELVFSLYGDR
301: SLCHSYYQSS VFKVLCTDLS NGLPNPEGCF QFFVPNAVLG DGDDRNSIQI KNQSAASNNM PHQPPHQPGW PAWQ

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.