Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004176.1-P | Field mustard | nucleus | 98.53 | 99.41 |
| CDY36211 | Canola | nucleus | 86.76 | 81.72 |
| AT1G66660.2 | Thale cress | nucleus | 47.35 | 46.26 |
| CDY70665 | Canola | nucleus | 38.53 | 40.43 |
| CDY12498 | Canola | nucleus | 30.29 | 37.87 |
| CDY25763 | Canola | nucleus | 29.71 | 37.13 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 9.71 | 36.26 |
| CDY11709 | Canola | nucleus | 17.06 | 35.15 |
| CDY27008 | Canola | nucleus | 33.24 | 34.35 |
| CDY47873 | Canola | nucleus | 32.35 | 33.95 |
| CDY52473 | Canola | nucleus | 27.06 | 32.39 |
| CDX99687 | Canola | nucleus | 26.76 | 32.16 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 27.65 | 31.97 |
| CDY10787 | Canola | plastid | 27.06 | 31.83 |
| CDY01699 | Canola | nucleus, plastid | 25.88 | 31.21 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 27.06 | 30.98 |
| KRH58384 | Soybean | nucleus | 27.35 | 29.06 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 14.71 | 27.93 |
| KRH42263 | Soybean | nucleus | 26.18 | 27.81 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 28.53 | 27.79 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.94 | 27.6 |
| CDY36209 | Canola | plastid | 17.06 | 27.49 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 16.76 | 26.64 |
| CDY01695 | Canola | nucleus | 24.12 | 26.54 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 15.59 | 26.5 |
| CDY01757 | Canola | cytosol | 4.12 | 26.42 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 19.71 | 25.19 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.24 | 24.46 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 19.41 | 24.0 |
| PGSC0003DMT400043050 | Potato | nucleus | 26.47 | 23.62 |
| CDY67278 | Canola | cytosol | 5.59 | 23.46 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 17.35 | 23.41 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 18.24 | 23.4 |
| Solyc03g034460.2.1 | Tomato | nucleus | 24.41 | 23.06 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 18.82 | 22.78 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 18.82 | 22.7 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 20.0 | 22.67 |
| Solyc03g042550.1.1 | Tomato | nucleus | 23.82 | 22.5 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 18.53 | 22.34 |
| Solyc03g034450.2.1 | Tomato | nucleus | 25.59 | 22.19 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 17.35 | 22.18 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 16.47 | 22.13 |
| KXG32009 | Sorghum | nucleus | 19.12 | 21.96 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 17.65 | 21.9 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 17.65 | 21.9 |
| KXG32014 | Sorghum | nucleus | 14.12 | 21.82 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 17.94 | 21.63 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 17.35 | 21.53 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 17.35 | 21.53 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 17.35 | 21.45 |
| CDY06889 | Canola | cytosol | 18.53 | 21.21 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 17.06 | 21.17 |
| OQU78944 | Sorghum | nucleus | 20.29 | 21.17 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 17.06 | 21.09 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 18.82 | 20.85 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 20.29 | 20.85 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 20.59 | 20.83 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 17.94 | 20.82 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 16.47 | 20.82 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 18.24 | 20.74 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 17.65 | 20.69 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 18.24 | 20.67 |
| CDX92848 | Canola | nucleus | 18.53 | 20.66 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 17.06 | 20.57 |
| CDX97399 | Canola | nucleus | 19.41 | 20.56 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 17.65 | 20.55 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 16.76 | 20.5 |
| Zm00001d041049_P001 | Maize | nucleus | 19.71 | 20.49 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 17.06 | 20.42 |
| KXG37941 | Sorghum | cytosol | 16.76 | 20.36 |
| CDY14268 | Canola | nucleus | 19.12 | 20.31 |
| CDX67865 | Canola | nucleus | 19.12 | 20.12 |
| CDY25077 | Canola | nucleus | 19.12 | 20.12 |
| EES00387 | Sorghum | nucleus | 18.82 | 20.06 |
| CDY43950 | Canola | nucleus | 19.12 | 20.0 |
| Solyc03g042520.1.1 | Tomato | nucleus | 18.24 | 20.0 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 18.53 | 20.0 |
| CDX89221 | Canola | nucleus | 18.82 | 19.88 |
| CDY19018 | Canola | nucleus | 18.82 | 19.88 |
| CDY35390 | Canola | nucleus | 17.94 | 19.87 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 17.94 | 19.87 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 17.35 | 19.87 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 16.18 | 19.86 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 19.12 | 19.82 |
| CDX89132 | Canola | cytosol | 18.82 | 19.63 |
| CDY14808 | Canola | cytosol | 17.35 | 19.54 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 17.06 | 19.53 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 16.76 | 19.52 |
| CDY57244 | Canola | cytosol | 17.65 | 19.48 |
| CDY22549 | Canola | nucleus | 17.65 | 19.42 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 19.41 | 19.41 |
| CDX71977 | Canola | cytosol | 17.65 | 19.35 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 15.29 | 19.33 |
| CDX88968 | Canola | cytosol | 17.65 | 19.29 |
| CDY67927 | Canola | cytosol | 17.65 | 19.29 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 15.88 | 19.29 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 20.29 | 19.27 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 17.06 | 19.27 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 16.76 | 19.19 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 16.47 | 19.18 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 19.12 | 19.12 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 13.82 | 19.03 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 18.82 | 18.88 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 15.59 | 18.86 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 18.82 | 18.82 |
| TraesCSU01G045900.1 | Wheat | cytosol | 16.47 | 18.73 |
| CDY06056 | Canola | cytosol | 14.41 | 18.7 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 14.71 | 18.66 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 15.29 | 18.57 |
| CDY56244 | Canola | cytosol | 15.59 | 18.34 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 17.94 | 18.21 |
| OQU77422 | Sorghum | cytosol | 15.29 | 18.18 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 17.35 | 18.04 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 17.35 | 17.77 |
| OQU86453 | Sorghum | cytosol | 11.18 | 17.76 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 18.24 | 17.51 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 17.94 | 17.33 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 18.53 | 16.89 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 18.53 | 16.8 |
| HORVU2Hr1G118840.1 | Barley | plastid | 18.24 | 16.71 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 18.24 | 16.53 |
| EES17731 | Sorghum | nucleus | 16.18 | 15.9 |
| KXG21322 | Sorghum | nucleus | 17.35 | 15.78 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 9.12 | 15.5 |
| OQU77425 | Sorghum | nucleus | 17.06 | 15.43 |
| EES17735 | Sorghum | mitochondrion | 20.29 | 15.37 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 15.29 | 15.25 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 17.65 | 14.81 |
| CDX82523 | Canola | cytosol | 9.12 | 14.49 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 19.41 | 14.38 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 19.12 | 14.25 |
| TraesCSU01G021700.1 | Wheat | nucleus | 15.29 | 14.25 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 15.0 | 13.97 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 13.53 | 13.94 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 14.71 | 13.7 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 15.29 | 13.61 |
| TraesCSU01G231400.1 | Wheat | nucleus | 13.82 | 13.58 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 18.53 | 13.58 |
| CDX75727 | Canola | cytosol | 8.53 | 13.55 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 10.88 | 13.41 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 8.53 | 13.12 |
| TraesCS1A01G070000.1 | Wheat | plastid | 9.12 | 12.76 |
| EES02574 | Sorghum | nucleus | 15.88 | 12.05 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 10.0 | 11.93 |
| CDY01758 | Canola | cytosol | 15.29 | 11.9 |
| CDY38819 | Canola | nucleus | 6.76 | 11.86 |
| CDY64066 | Canola | cytosol | 3.24 | 10.19 |
| CDY67899 | Canola | cytosol, plastid | 4.12 | 8.43 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.59 | 2.02 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078E9U2 | EnsemblPlants:CDX96138 | ProteinID:CDX96138 | ProteinID:CDX96138.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00102195001 | InterPro:IPR001841 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like |
| UniPathway:UPA00143 | UniParc:UPI0004EDB5A4 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg |
Description
BnaA07g25930D
Coordinates
chrLK031892:+:1272300..1273415
Molecular Weight (calculated)
38156.2 Da
IEP (calculated)
4.689
GRAVY (calculated)
-0.363
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPPRNPDH RSPKRPRFPL SPPVPEEEEE EDDDEFSDVS ANDVEDRSDE SADDEEDDVE VVAVVTVAEA QSRGYLGSSS SSSSIPSSPV KLNSTEILDC
101: PTCLEPLRGP IYQCHNGHIT CSPCLPRVYK HCPVCRMPIG DIRCRAMEMV IESSSVPCRY AMYGCKETTL YGDQAHEKVC LYTRCQCPVT NCNYAGGYKE
201: VEAHARLLHS WDVEDLTPFV FNTPQIFSIN LARTSRAVFQ EEKEGDMIVV QTFKRTNAGL CVTVNHIAPL SLGLPNLSCS IAKLNSFTTL RLGVMVKRIQ
301: NVREQEEPSE DFLFIPDYML IDNHLKMQIC VGSEFKYVHI
101: PTCLEPLRGP IYQCHNGHIT CSPCLPRVYK HCPVCRMPIG DIRCRAMEMV IESSSVPCRY AMYGCKETTL YGDQAHEKVC LYTRCQCPVT NCNYAGGYKE
201: VEAHARLLHS WDVEDLTPFV FNTPQIFSIN LARTSRAVFQ EEKEGDMIVV QTFKRTNAGL CVTVNHIAPL SLGLPNLSCS IAKLNSFTTL RLGVMVKRIQ
301: NVREQEEPSE DFLFIPDYML IDNHLKMQIC VGSEFKYVHI
001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.