Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G004860.1 | Barley | cytosol | 36.49 | 42.86 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 35.81 | 39.85 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 36.15 | 39.05 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 35.81 | 38.69 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 35.47 | 38.32 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 35.47 | 38.32 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 33.45 | 37.22 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 37.5 | 37.12 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 35.47 | 35.96 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 37.16 | 35.83 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 34.8 | 35.27 |
| KXG37941 | Sorghum | cytosol | 31.42 | 33.21 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 27.7 | 33.2 |
| CDY11709 | Canola | nucleus | 17.57 | 31.52 |
| Os01t0761900-00 | Rice | cytosol | 17.23 | 31.29 |
| Os01t0125500-00 | Rice | mitochondrion | 27.36 | 28.83 |
| EES00387 | Sorghum | nucleus | 30.74 | 28.53 |
| OQU77422 | Sorghum | cytosol | 26.35 | 27.27 |
| Bra025434.1-P | Field mustard | nucleus | 25.68 | 26.76 |
| CDY10787 | Canola | plastid | 26.01 | 26.64 |
| Bra018266.1-P | Field mustard | plastid | 26.01 | 26.64 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 29.39 | 26.61 |
| CDY01699 | Canola | nucleus, plastid | 25.34 | 26.6 |
| AT5G37890.1 | Thale cress | nucleus | 25.68 | 26.57 |
| CDY52473 | Canola | nucleus | 25.34 | 26.41 |
| EES17731 | Sorghum | nucleus | 30.41 | 26.01 |
| CDY12498 | Canola | nucleus | 23.65 | 25.74 |
| CDY36209 | Canola | plastid | 18.24 | 25.59 |
| CDX99687 | Canola | nucleus | 24.32 | 25.44 |
| Bra000425.1-P | Field mustard | nucleus | 24.32 | 25.44 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.92 | 25.34 |
| KRH42263 | Soybean | nucleus | 27.03 | 25.0 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.89 | 25.0 |
| AT1G66620.1 | Thale cress | nucleus | 26.35 | 24.92 |
| AT1G66630.1 | Thale cress | cytosol | 25.34 | 24.75 |
| CDY25763 | Canola | nucleus | 22.64 | 24.63 |
| Bra012354.1-P | Field mustard | cytosol | 22.64 | 24.63 |
| KXG21322 | Sorghum | nucleus | 31.08 | 24.6 |
| AT5G37870.1 | Thale cress | nucleus | 23.31 | 24.56 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 22.3 | 24.54 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.2 | 24.46 |
| KRH58384 | Soybean | nucleus | 26.35 | 24.38 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 29.05 | 24.29 |
| KXG32014 | Sorghum | nucleus | 17.91 | 24.09 |
| OQU86453 | Sorghum | cytosol | 17.23 | 23.83 |
| CDY01695 | Canola | nucleus | 24.66 | 23.62 |
| OQU77425 | Sorghum | nucleus | 29.73 | 23.4 |
| OQU78944 | Sorghum | nucleus | 25.68 | 23.31 |
| AT5G37910.1 | Thale cress | nucleus | 21.62 | 23.19 |
| KXG32011 | Sorghum | cytosol | 18.24 | 22.22 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.96 | 22.11 |
| Bra022858.1-P | Field mustard | nucleus | 22.64 | 22.04 |
| AT5G37900.1 | Thale cress | nucleus | 17.91 | 21.99 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 21.62 | 21.55 |
| KXG32010 | Sorghum | extracellular | 17.57 | 21.22 |
| CDY70665 | Canola | nucleus | 22.97 | 20.99 |
| AT1G66650.1 | Thale cress | nucleus | 23.31 | 20.97 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 24.66 | 20.92 |
| CDY01757 | Canola | cytosol | 3.72 | 20.75 |
| Bra004174.1-P | Field mustard | nucleus | 24.66 | 20.68 |
| CDY47873 | Canola | nucleus | 22.64 | 20.68 |
| Bra028395.1-P | Field mustard | nucleus | 22.64 | 20.68 |
| CDY27008 | Canola | nucleus | 22.97 | 20.67 |
| Solyc03g034460.2.1 | Tomato | nucleus | 25.0 | 20.56 |
| Bra019710.1-P | Field mustard | nucleus | 23.65 | 20.47 |
| AT5G62800.1 | Thale cress | nucleus | 23.99 | 20.4 |
| Bra004402.1-P | Field mustard | nucleus | 21.62 | 20.19 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.16 | 20.11 |
| AT5G37930.1 | Thale cress | nucleus | 23.65 | 20.06 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.32 | 20.0 |
| PGSC0003DMT400043050 | Potato | nucleus | 25.34 | 19.68 |
| AT1G66610.1 | Thale cress | nucleus | 24.32 | 19.67 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 20.27 | 19.54 |
| AT1G66660.2 | Thale cress | nucleus | 22.97 | 19.54 |
| EER92255 | Sorghum | nucleus | 19.93 | 19.54 |
| Bra004176.1-P | Field mustard | nucleus | 21.96 | 19.29 |
| EER97677 | Sorghum | cytosol | 19.59 | 19.21 |
| Solyc03g034450.2.1 | Tomato | nucleus | 25.34 | 19.13 |
| CDX96138 | Canola | nucleus | 21.96 | 19.12 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 20.95 | 19.02 |
| EES17735 | Sorghum | mitochondrion | 28.38 | 18.71 |
| Solyc03g042520.1.1 | Tomato | nucleus | 19.26 | 18.39 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 16.22 | 18.05 |
| CDY36211 | Canola | nucleus | 21.96 | 18.01 |
| EES02573 | Sorghum | cytosol | 20.95 | 17.77 |
| OQU84285 | Sorghum | cytosol | 18.58 | 17.68 |
| OQU86460 | Sorghum | nucleus | 19.93 | 17.66 |
| EES06707 | Sorghum | nucleus | 19.93 | 17.15 |
| KXG32019 | Sorghum | nucleus, plastid | 20.95 | 16.67 |
| KXG32028 | Sorghum | plastid | 18.92 | 16.67 |
| KXG32085 | Sorghum | nucleus | 12.5 | 16.37 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 18.58 | 15.58 |
| EES02574 | Sorghum | nucleus | 20.61 | 13.62 |
| KXG19745 | Sorghum | extracellular | 4.05 | 12.5 |
| CDY01758 | Canola | cytosol | 14.86 | 10.07 |
| KXG22272 | Sorghum | cytosol | 3.38 | 9.8 |
| KXG30435 | Sorghum | cytosol | 3.38 | 9.8 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A1B6Q262 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | EnsemblPlants:KXG32009 | ProteinID:KXG32009 | ProteinID:KXG32009.1 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF35 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3003G090000 | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniParc:UPI00081AC8F3 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:7850589..7853722
Molecular Weight (calculated)
33500.2 Da
IEP (calculated)
6.356
GRAVY (calculated)
-0.556
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSDSSKQT GETQQEERNR KRKDPDGAAT SVTMELEVLD CPICYGPLQP PIFQCVVGHL ICSSCRGKLQ KPKKCHHCSC ESGSNRCHGV EKIIESIQVP
101: CSNTRYGCSM KTSYYEREDH ETKCQYAPCF CPDTGCSFSA STGLLQEHFT TEHHWPSTKC KYGWCFYADV KEGVHVISSE DEQLFLLNIA SEPFGCVISV
201: FCVQPHDTEP KSRCAVTFSF WKNNSYHSQS SEFQVPSTTL SDGLPREHFL FILPRFYMEE DSRICITMKK DSAFQREETD TSGADCYSSF FSLGKK
101: CSNTRYGCSM KTSYYEREDH ETKCQYAPCF CPDTGCSFSA STGLLQEHFT TEHHWPSTKC KYGWCFYADV KEGVHVISSE DEQLFLLNIA SEPFGCVISV
201: FCVQPHDTEP KSRCAVTFSF WKNNSYHSQS SEFQVPSTTL SDGLPREHFL FILPRFYMEE DSRICITMKK DSAFQREETD TSGADCYSSF FSLGKK
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.