Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041049_P001 | Maize | nucleus | 88.65 | 88.38 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 65.64 | 63.69 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 63.8 | 62.84 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 63.19 | 62.8 |
| Os06t0311300-01 | Rice | plasma membrane | 47.85 | 62.4 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 64.11 | 58.38 |
| CDY11709 | Canola | nucleus | 15.03 | 29.7 |
| KRH42263 | Soybean | nucleus | 29.14 | 29.69 |
| KRH58384 | Soybean | nucleus | 28.83 | 29.38 |
| Bra025434.1-P | Field mustard | nucleus | 24.85 | 28.52 |
| CDX99687 | Canola | nucleus | 24.54 | 28.27 |
| CDY52473 | Canola | nucleus | 24.54 | 28.17 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.56 | 27.0 |
| CDY01699 | Canola | nucleus, plastid | 23.01 | 26.6 |
| AT5G37910.1 | Thale cress | nucleus | 22.09 | 26.09 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.72 | 26.09 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.48 | 25.79 |
| KXG32009 | Sorghum | nucleus | 23.31 | 25.68 |
| Bra018266.1-P | Field mustard | plastid | 22.7 | 25.61 |
| CDY10787 | Canola | plastid | 22.7 | 25.61 |
| CDY36209 | Canola | plastid | 16.56 | 25.59 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 20.25 | 24.81 |
| KXG32011 | Sorghum | cytosol | 18.4 | 24.69 |
| Bra022858.1-P | Field mustard | nucleus | 23.01 | 24.67 |
| KXG32010 | Sorghum | extracellular | 18.4 | 24.49 |
| AT5G37870.1 | Thale cress | nucleus | 20.86 | 24.2 |
| PGSC0003DMT400043050 | Potato | nucleus | 28.22 | 24.15 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 19.63 | 24.06 |
| Bra000425.1-P | Field mustard | nucleus | 20.86 | 24.03 |
| CDY12498 | Canola | nucleus | 19.94 | 23.9 |
| CDY25763 | Canola | nucleus | 19.94 | 23.9 |
| Bra028395.1-P | Field mustard | nucleus | 23.62 | 23.77 |
| CDY47873 | Canola | nucleus | 23.62 | 23.77 |
| Bra012354.1-P | Field mustard | cytosol | 19.63 | 23.53 |
| AT5G37930.1 | Thale cress | nucleus | 25.15 | 23.5 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.17 | 23.47 |
| AT1G66630.1 | Thale cress | cytosol | 21.78 | 23.43 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 19.33 | 23.42 |
| Solyc03g034460.2.1 | Tomato | nucleus | 25.77 | 23.33 |
| AT1G66620.1 | Thale cress | nucleus | 22.39 | 23.32 |
| CDY27008 | Canola | nucleus | 23.31 | 23.1 |
| AT5G37890.1 | Thale cress | nucleus | 20.25 | 23.08 |
| Solyc03g034450.2.1 | Tomato | nucleus | 27.61 | 22.96 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 20.86 | 22.9 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 18.4 | 22.56 |
| KXG37941 | Sorghum | cytosol | 19.33 | 22.5 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.54 | 22.22 |
| AT1G66650.1 | Thale cress | nucleus | 22.39 | 22.19 |
| AT5G37900.1 | Thale cress | nucleus | 16.26 | 21.99 |
| Bra004402.1-P | Field mustard | nucleus | 20.86 | 21.45 |
| KXG32014 | Sorghum | nucleus | 14.42 | 21.36 |
| OQU77422 | Sorghum | cytosol | 18.71 | 21.33 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 22.7 | 21.2 |
| OQU86453 | Sorghum | cytosol | 13.8 | 21.03 |
| Solyc03g042520.1.1 | Tomato | nucleus | 19.94 | 20.97 |
| KXG32085 | Sorghum | nucleus | 14.42 | 20.8 |
| CDY01695 | Canola | nucleus | 19.63 | 20.71 |
| Bra004174.1-P | Field mustard | nucleus | 22.09 | 20.4 |
| CDX96138 | Canola | nucleus | 21.17 | 20.29 |
| Bra004176.1-P | Field mustard | nucleus | 20.86 | 20.18 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 19.94 | 19.88 |
| AT1G66610.1 | Thale cress | nucleus | 22.09 | 19.67 |
| AT5G62800.1 | Thale cress | nucleus | 20.86 | 19.54 |
| CDY70665 | Canola | nucleus | 19.33 | 19.44 |
| KXG32028 | Sorghum | plastid | 19.94 | 19.35 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 19.33 | 19.33 |
| EER97677 | Sorghum | cytosol | 17.79 | 19.21 |
| Bra019710.1-P | Field mustard | nucleus | 19.94 | 19.01 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.43 | 18.99 |
| OQU84285 | Sorghum | cytosol | 18.1 | 18.97 |
| EER92255 | Sorghum | nucleus | 17.48 | 18.87 |
| EES00387 | Sorghum | nucleus | 18.4 | 18.81 |
| AT1G66660.2 | Thale cress | nucleus | 19.94 | 18.68 |
| OQU86460 | Sorghum | nucleus | 19.02 | 18.56 |
| CDY36211 | Canola | nucleus | 20.55 | 18.56 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 19.63 | 18.08 |
| EES02573 | Sorghum | cytosol | 19.33 | 18.05 |
| KXG32019 | Sorghum | nucleus, plastid | 20.55 | 18.01 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 16.56 | 17.59 |
| EES17731 | Sorghum | nucleus | 18.4 | 17.34 |
| KXG21322 | Sorghum | nucleus | 19.63 | 17.11 |
| CDY01757 | Canola | cytosol | 2.76 | 16.98 |
| EES06707 | Sorghum | nucleus | 17.18 | 16.28 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 16.87 | 15.58 |
| OQU77425 | Sorghum | nucleus | 17.79 | 15.43 |
| EES17735 | Sorghum | mitochondrion | 21.17 | 15.37 |
| EES02574 | Sorghum | nucleus | 20.25 | 14.73 |
| KXG19745 | Sorghum | extracellular | 3.99 | 13.54 |
| CDY01758 | Canola | cytosol | 14.72 | 10.98 |
| KXG22272 | Sorghum | cytosol | 3.37 | 10.78 |
| KXG30435 | Sorghum | cytosol | 3.37 | 10.78 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A1Z5R589 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | EnsemblPlants:OQU78944 | ProteinID:OQU78944 | ProteinID:OQU78944.1 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF32 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3008G075900 | SUPFAM:SSF49599 | SUPFAM:SSF57850 |
| InterPro:TRAF-like | UniParc:UPI000B425CD6 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:+:11302455..11306301
Molecular Weight (calculated)
35705.9 Da
IEP (calculated)
5.076
GRAVY (calculated)
-0.190
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKFSFDDAS EDPPAFSSEG EKRKREDGPA EAAAGGGSSK ARISAVEGEE QDGSAVVGAE RAEGTGRNLE TVVGGEADGI SVRIDPDVLD CSICFEPLQP
101: PLYQCQNGHV VCFSCWSRLT NKCHICSHDA NFVRNIALEK VVESVKSYCS YAKWGCNKLV SYACRNAHEE SCLYAPSVCP IPGCEYRGFT GWWSGHFLTN
201: HNNDGLCFSY GQCFEVSLEM SVPFLVLLAE DDHLFIFINK NVIPFGHALS VCCLRNGNLN GNFFYEMRAT SNGNTENSLQ LKASVTNTRE WQGLSPTEAF
301: LLVPYAFIKS SKLTLNVSIE RVAHGM
101: PLYQCQNGHV VCFSCWSRLT NKCHICSHDA NFVRNIALEK VVESVKSYCS YAKWGCNKLV SYACRNAHEE SCLYAPSVCP IPGCEYRGFT GWWSGHFLTN
201: HNNDGLCFSY GQCFEVSLEM SVPFLVLLAE DDHLFIFINK NVIPFGHALS VCCLRNGNLN GNFFYEMRAT SNGNTENSLQ LKASVTNTRE WQGLSPTEAF
301: LLVPYAFIKS SKLTLNVSIE RVAHGM
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.