CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32028	Sorghum	plastid	68.56	68.15
TraesCS3B01G442300.1	Wheat	cytosol	34.73	42.34
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	34.13	41.3
TraesCS3A01G027500.1	Wheat	plastid	34.13	41.3
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	33.53	40.88
TraesCS3B01G018000.2	Wheat	cytosol	33.23	40.81
TraesCS3D01G018100.1	Wheat	cytosol	32.34	40.3
TraesCS3A01G027900.1	Wheat	cytosol	32.34	39.71
TraesCS3D01G018300.1	Wheat	mitochondrion	35.33	36.53
KXG32011	Sorghum	cytosol	23.35	32.1
TraesCS3B01G019600.1	Wheat	plastid	30.24	31.96
KXG32010	Sorghum	extracellular	22.75	31.02
KXG32008	Sorghum	cytosol, nucleus, plastid	21.26	26.69
OQU86439	Sorghum	cytosol, mitochondrion, plastid	19.16	24.06
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	22.16	22.7
KXG32085	Sorghum	nucleus	15.27	22.57
KXG37942	Sorghum	cytosol, nucleus, plastid	17.96	22.56
KXG37941	Sorghum	cytosol	18.56	22.14
EES00387	Sorghum	nucleus	20.96	21.94
EES02573	Sorghum	cytosol	22.16	21.2
OQU77422	Sorghum	cytosol	17.96	20.98
KXG32019	Sorghum	nucleus, plastid	23.05	20.7
KXG32009	Sorghum	nucleus	17.66	19.93
OQU86453	Sorghum	cytosol	12.57	19.63
OQU84285	Sorghum	cytosol	17.96	19.29
OQU78944	Sorghum	nucleus	18.56	19.02
EES17728	Sorghum	cytosol, mitochondrion, nucleus	18.56	18.96
OQU77414	Sorghum	mitochondrion, nucleus	19.76	18.64
EES02178	Sorghum	cytosol, nucleus, peroxisome	17.07	18.57
EER92255	Sorghum	nucleus	16.47	18.21
OQU77425	Sorghum	nucleus	20.06	17.82
EES06707	Sorghum	nucleus	18.26	17.73
KXG32014	Sorghum	nucleus	11.68	17.73
KXG21322	Sorghum	nucleus	19.76	17.65
EER97677	Sorghum	cytosol	15.87	17.55
EES19270	Sorghum	cytosol, nucleus, peroxisome	17.96	17.0
EES17731	Sorghum	nucleus	17.37	16.76
EES17735	Sorghum	mitochondrion	19.76	14.7
EES02574	Sorghum	nucleus	17.96	13.39
KXG19745	Sorghum	extracellular	3.29	11.46
KXG30435	Sorghum	cytosol	3.29	10.78
KXG22272	Sorghum	cytosol	3.29	10.78

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1W0VWD7	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	ProteinID:OQU86457.1	EnsemblPlants:OQU86460	ProteinID:OQU86460	ProteinID:OQU86460.1	PFAM:PF03145
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF35	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G092600	SUPFAM:SSF49599
InterPro:TRAF-like	UniParc:UPI0009DC8313	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:8050658..8059568

Molecular Weight (calculated)

36796.1 Da

IEP (calculated)

7.038

GRAVY (calculated)

-0.341

Length

334 amino acids

Sequence
(BLAST)

001: MISPKERAAQ HALSIYYRNR TIHEGFAGTS GFKRMSKRGL QMGGKRPRQQ VPLSRAPTKG PRLQDETLAE MSQHQAEEKI TVTINANLLK CCVCFGPLTS
101: PIFQCTKGHV SCSGCCTERY EDDEVECLMC REPETATRCL AMEHFLGGIH VPCPFQQHGC TEMIPYASEQ AHKASCAHAP RHCPISGCAG YAGKPLREHI
201: RQDHPGVVRT VVSPCCLRPL RMRAHEQARV VRLCNGTGNG DDGGGGGAEF LVVVGQYKQL GRALSVVHLV DESVDEQDFK HRIDVVSKAG VLSLSGETLD
301: AEHLAEPYEA SLFLFVPNET WDSPEGIRVF IELE

Best Arabidopsis Sequence Match ( AT5G37890.1 )
(BLAST)

001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.