Factsheet for TraesCS3D01G020800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	92.75	93.43
TraesCS3B01G019600.1	Wheat	plastid	83.33	72.78
TraesCS3D01G018100.1	Wheat	cytosol	59.78	61.57
TraesCS3D01G018300.1	Wheat	mitochondrion	60.14	51.39
KXG32028	Sorghum	plastid	42.39	34.82
OQU86460	Sorghum	nucleus	41.3	34.13
TraesCS5D01G504400.1	Wheat	cytosol	23.19	31.84
TraesCS3D01G028800.1	Wheat	nucleus	20.65	26.64
TraesCS3D01G504900.1	Wheat	nucleus	23.19	23.36
TraesCS3D01G029000.1	Wheat	cytosol	22.46	21.99
TraesCS3D01G031300.1	Wheat	nucleus	21.74	21.9
TraesCS3D01G015600.1	Wheat	cytosol	23.55	21.89
TraesCS4D01G356400.2	Wheat	nucleus	26.45	21.73
TraesCS3D01G030300.1	Wheat	nucleus	21.74	20.07
TraesCS2D01G131700.1	Wheat	cytosol	21.74	19.93
TraesCS4D01G164700.1	Wheat	nucleus	21.74	19.93
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	17.39	19.05
TraesCS1D01G061700.1	Wheat	nucleus	24.28	19.03
TraesCS3D01G029600.1	Wheat	nucleus	22.46	18.51
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	22.1	17.89
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	21.01	17.85
TraesCS3D01G029300.1	Wheat	nucleus	19.93	16.18
TraesCS3D01G029400.1	Wheat	nucleus	24.64	14.81
TraesCS1D01G102900.1	Wheat	nucleus	19.93	14.4
TraesCS2D01G600200.1	Wheat	nucleus	18.48	13.97
TraesCS2D01G564800.1	Wheat	nucleus, plastid	18.48	13.6
TraesCS3D01G029700.1	Wheat	cytosol, mitochondrion, nucleus	13.77	13.33

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF43	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G020800	EnsemblPlants:TraesCS3D01G020800.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:+:6975070..6977193

Molecular Weight (calculated)

30197.1 Da

IEP (calculated)

7.024

GRAVY (calculated)

-0.177

Length

276 amino acids

Sequence
(BLAST)

001: MAKKAGAERD AAAESCAQKK ARIEYEAKAA ASKITVNLDH KLLECSACCS PLAPPLFQCT NGHIACSECR TNAEYSCSFC AEPANTRCDI MERVLGGMTA
101: PCSFREFGCS ATIPFTKKLT QEESCLHAPC HCPIPYCRLY ANRGQCLREH IETKHCLVPY GDATAGSLSP VRVCDSEPAR LVFLDARAVF LLVVERSGPS
201: GRAVSVVQLV SEPVKEEEEK DFKYKIQVHT RAGVLSLSGE TQSVGRLMRP YQAAASLFVS DDVWSPQDSP VYLEFK

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.