Factsheet for TraesCS3D01G018300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G027500.1	Wheat	plastid	79.57	93.12
TraesCS3B01G442300.1	Wheat	cytosol	78.64	92.7
TraesCS3D01G018100.1	Wheat	cytosol	58.2	70.15
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	51.39	60.14
OQU86460	Sorghum	nucleus	36.53	35.33
KXG32028	Sorghum	plastid	36.22	34.82
TraesCS5D01G504400.1	Wheat	cytosol	21.36	34.33
TraesCS3D01G028800.1	Wheat	nucleus	17.34	26.17
TraesCS3D01G504900.1	Wheat	nucleus	21.36	25.18
TraesCS3D01G015600.1	Wheat	cytosol	21.05	22.9
TraesCS3D01G029000.1	Wheat	cytosol	19.2	21.99
TraesCS3D01G031300.1	Wheat	nucleus	17.96	21.17
TraesCS4D01G356400.2	Wheat	nucleus	21.98	21.13
TraesCS3D01G030300.1	Wheat	nucleus	19.5	21.07
TraesCS2D01G131700.1	Wheat	cytosol	18.27	19.6
TraesCS4D01G164700.1	Wheat	nucleus	18.27	19.6
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	15.17	19.44
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	19.2	18.18
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	18.27	18.15
TraesCS1D01G061700.1	Wheat	nucleus	18.89	17.33
TraesCS3D01G029600.1	Wheat	nucleus	17.96	17.31
TraesCS3D01G029300.1	Wheat	nucleus	17.03	16.18
TraesCS3D01G029700.1	Wheat	cytosol, mitochondrion, nucleus	12.69	14.39
TraesCS2D01G564800.1	Wheat	nucleus, plastid	16.41	14.13
TraesCS2D01G600200.1	Wheat	nucleus	15.79	13.97
TraesCS1D01G102900.1	Wheat	nucleus	16.41	13.87
TraesCS3D01G029400.1	Wheat	nucleus	18.89	13.29

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF35	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G018300	EnsemblPlants:TraesCS3D01G018300.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:6167473..6169895

Molecular Weight (calculated)

35030.3 Da

IEP (calculated)

8.576

GRAVY (calculated)

-0.192

Length

323 amino acids

Sequence
(BLAST)

001: MGGRNGSLRC SNRLRKRRII LHLETASREE SSTGTGSRST ARRARREIDR PSIMAKKAGA DRTAAAVKAG SCSRKKAKAA SSSKITVTLD PKLLECSVCC
101: SPLVAPLSQC ANGHITCFEC SSDVNYSCSL CSGPANTHCS ALERILAGLA VPCSFQEHGC TEMIPFTEKL AHEESCLHAP CHCPIAGCCP YPGRSLHDHI
201: KGEHPMIQYT RITAGRLYPL SMRHDELARL VSLGSKAVFL LVVDRSVPSG LTLSVIHLMS DPIEREDFKY KIQVHTQTGI LSLSGETQSV GRLRGPYQAG
301: ASLFVSDTMW SPPDSPVYLE LKC

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.