Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G052400.1 | Wheat | nucleus | 95.0 | 95.0 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 93.82 | 93.82 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 68.82 | 78.0 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 31.47 | 50.0 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 40.0 | 48.23 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 47.94 | 46.31 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 44.12 | 44.78 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 34.41 | 41.05 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 48.24 | 35.73 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 26.18 | 32.48 |
| CDY11709 | Canola | nucleus | 15.29 | 31.52 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 25.0 | 31.02 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 26.18 | 29.77 |
| CDY01699 | Canola | nucleus, plastid | 21.18 | 25.53 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.18 | 24.89 |
| Bra000425.1-P | Field mustard | nucleus | 20.59 | 24.73 |
| AT5G37890.1 | Thale cress | nucleus | 20.59 | 24.48 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 21.18 | 24.24 |
| CDY36209 | Canola | plastid | 15.0 | 24.17 |
| CDX99687 | Canola | nucleus | 19.71 | 23.67 |
| CDY12498 | Canola | nucleus | 18.82 | 23.53 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.35 | 23.46 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 18.53 | 23.42 |
| PGSC0003DMT400043047 | Potato | cytosol | 12.65 | 23.37 |
| CDY52473 | Canola | nucleus | 19.41 | 23.24 |
| Bra025434.1-P | Field mustard | nucleus | 19.12 | 22.89 |
| KRH42263 | Soybean | nucleus | 21.47 | 22.81 |
| Bra012354.1-P | Field mustard | cytosol | 18.24 | 22.79 |
| CDY25763 | Canola | nucleus | 18.24 | 22.79 |
| AT1G66630.1 | Thale cress | cytosol | 20.29 | 22.77 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 22.65 | 22.06 |
| KRH58384 | Soybean | nucleus | 20.59 | 21.88 |
| Bra004174.1-P | Field mustard | nucleus | 22.65 | 21.81 |
| Bra018266.1-P | Field mustard | plastid | 18.53 | 21.8 |
| CDY10787 | Canola | plastid | 18.53 | 21.8 |
| Bra022858.1-P | Field mustard | nucleus | 19.41 | 21.71 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 12.65 | 21.5 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 15.88 | 21.43 |
| AT1G66620.1 | Thale cress | nucleus | 19.71 | 21.41 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 18.82 | 21.26 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 18.24 | 21.09 |
| CDY01695 | Canola | nucleus | 19.12 | 21.04 |
| AT5G37870.1 | Thale cress | nucleus | 17.35 | 21.0 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 18.53 | 20.93 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 20.29 | 20.54 |
| CDY47873 | Canola | nucleus | 19.41 | 20.37 |
| Bra028395.1-P | Field mustard | nucleus | 19.41 | 20.37 |
| AT5G62800.1 | Thale cress | nucleus | 20.59 | 20.11 |
| AT5G37910.1 | Thale cress | nucleus | 16.18 | 19.93 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 16.18 | 19.93 |
| AT5G37900.1 | Thale cress | nucleus | 14.12 | 19.92 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 11.76 | 19.9 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 15.59 | 19.78 |
| AT5G37930.1 | Thale cress | nucleus | 20.29 | 19.77 |
| CDY27008 | Canola | nucleus | 19.12 | 19.76 |
| Solyc03g034460.2.1 | Tomato | nucleus | 20.88 | 19.72 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 18.53 | 19.38 |
| Bra004176.1-P | Field mustard | nucleus | 19.12 | 19.29 |
| Bra004402.1-P | Field mustard | nucleus | 17.94 | 19.24 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 16.76 | 19.19 |
| Solyc03g042550.1.1 | Tomato | nucleus | 20.29 | 19.17 |
| PGSC0003DMT400043050 | Potato | nucleus | 21.47 | 19.16 |
| CDX96138 | Canola | nucleus | 19.12 | 19.12 |
| AT1G66650.1 | Thale cress | nucleus | 17.94 | 18.54 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 18.53 | 18.48 |
| AT1G66660.2 | Thale cress | nucleus | 18.82 | 18.39 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.18 | 18.37 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 20.59 | 18.32 |
| CDY36211 | Canola | nucleus | 19.12 | 18.01 |
| CDY70665 | Canola | nucleus | 16.76 | 17.59 |
| Bra019710.1-P | Field mustard | nucleus | 17.35 | 17.25 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 18.82 | 17.07 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 16.18 | 17.03 |
| AT1G66610.1 | Thale cress | nucleus | 17.94 | 16.67 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.0 | 16.45 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 17.35 | 16.16 |
| CDY01757 | Canola | cytosol | 1.76 | 11.32 |
| CDY01758 | Canola | cytosol | 12.35 | 9.61 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 |
| InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3D01G029300 | EnsemblPlants:TraesCS3D01G029300.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:10643209..10644489
Molecular Weight (calculated)
37860.1 Da
IEP (calculated)
7.459
GRAVY (calculated)
-0.380
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSNSNKRR GEAPREGDRW MDVRILKETL DCTVCFEHFS TEIYQCSVGH FICSSCRDKI LDKKCPTCSI KTSFNRCFGM EHVVRSVAFP CSNAKYGCRE
101: GHAYYQKERH EQVCPYGPCF CPASDCGFGG LTPELLDHLT IYHMSPCTDL PYHGTVALRL EPGIHVLAPR NKSNNHFFMI NMEPERLGYA ISVVCVQPKA
201: TEPKFACSMS YDCSGTGYCG SASCQIKSST LSDGLPTDYD LIPPKRKISG DRKFIMLRIT IHQASSVSKS RVKGKGLTSA PLTLFPRCSD EDADIVCRSC
301: IEGKGPTSSQ KLLFPDCSSD DDDDVPSRFE RALQRVSLLD
101: GHAYYQKERH EQVCPYGPCF CPASDCGFGG LTPELLDHLT IYHMSPCTDL PYHGTVALRL EPGIHVLAPR NKSNNHFFMI NMEPERLGYA ISVVCVQPKA
201: TEPKFACSMS YDCSGTGYCG SASCQIKSST LSDGLPTDYD LIPPKRKISG DRKFIMLRIT IHQASSVSKS RVKGKGLTSA PLTLFPRCSD EDADIVCRSC
301: IEGKGPTSSQ KLLFPDCSSD DDDDVPSRFE RALQRVSLLD
001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.