Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G206000.1 | Wheat | cytosol | 96.85 | 96.85 |
| TraesCS1A01G190800.1 | Wheat | plastid | 97.11 | 94.39 |
| HORVU1Hr1G049960.6 | Barley | mitochondrion | 94.49 | 85.31 |
| EER91893 | Sorghum | cytosol | 80.05 | 79.02 |
| Zm00001d021132_P004 | Maize | extracellular | 79.0 | 74.5 |
| Zm00001d007726_P001 | Maize | peroxisome | 47.51 | 73.88 |
| KXG29172 | Sorghum | peroxisome | 72.44 | 71.32 |
| Zm00001d007746_P002 | Maize | peroxisome | 35.43 | 71.05 |
| Zm00001d023779_P001 | Maize | extracellular | 71.65 | 70.73 |
| OQU84058 | Sorghum | mitochondrion | 74.54 | 69.27 |
| PGSC0003DMT400004567 | Potato | extracellular | 23.1 | 66.67 |
| PGSC0003DMT400066414 | Potato | cytosol | 29.13 | 64.91 |
| VIT_15s0045g01170.t01 | Wine grape | cytosol | 24.67 | 64.38 |
| Solyc01g080930.2.1 | Tomato | cytosol | 64.57 | 64.23 |
| VIT_09s0002g07160.t01 | Wine grape | mitochondrion, peroxisome, plastid | 61.94 | 63.78 |
| GSMUA_Achr5P13900_001 | Banana | cytosol | 52.23 | 63.78 |
| KRH07311 | Soybean | nucleus | 64.3 | 63.31 |
| AT5G65940.1 | Thale cress | peroxisome | 62.73 | 63.23 |
| AT2G30660.1 | Thale cress | peroxisome | 62.47 | 62.96 |
| CDY57769 | Canola | peroxisome | 61.42 | 62.73 |
| GSMUA_Achr8P14800_001 | Banana | cytosol | 65.35 | 62.72 |
| PGSC0003DMT400066409 | Potato | cytosol | 22.83 | 62.59 |
| Solyc01g108800.2.1 | Tomato | cytoskeleton, cytosol, peroxisome | 62.2 | 62.53 |
| PGSC0003DMT400066411 | Potato | nucleus | 23.88 | 62.33 |
| Bra031802.1-P | Field mustard | cytosol | 61.42 | 62.23 |
| CDY55104 | Canola | cytosol | 61.42 | 62.23 |
| GSMUA_Achr5P13870_001 | Banana | cytosol | 64.3 | 62.03 |
| Os12t0264500-02 | Rice | endoplasmic reticulum | 83.2 | 61.79 |
| AT2G30650.1 | Thale cress | peroxisome | 60.1 | 60.58 |
| PGSC0003DMT400000043 | Potato | cytosol, mitochondrion, peroxisome | 42.26 | 60.53 |
| Zm00001d007740_P001 | Maize | peroxisome | 59.84 | 60.48 |
| Solyc01g094090.2.1 | Tomato | cytosol | 51.97 | 60.18 |
| CDY31775 | Canola | peroxisome | 59.84 | 59.53 |
| PGSC0003DMT400000054 | Potato | cytosol | 59.84 | 59.38 |
| CDX97894 | Canola | peroxisome | 59.58 | 58.51 |
| Bra018392.1-P | Field mustard | cytosol | 56.69 | 58.06 |
| Bra018395.1-P | Field mustard | cytosol | 56.17 | 57.37 |
| CDY62818 | Canola | peroxisome | 60.37 | 57.36 |
| PGSC0003DMT400066424 | Potato | cytosol, nucleus, plastid | 10.24 | 57.35 |
| PGSC0003DMT400004521 | Potato | cytosol | 34.91 | 56.84 |
| CDY45442 | Canola | mitochondrion | 49.34 | 56.8 |
| Bra039968.1-P | Field mustard | peroxisome | 59.32 | 56.64 |
| CDY31769 | Canola | peroxisome | 59.58 | 56.61 |
| PGSC0003DMT400066419 | Potato | cytosol | 35.43 | 56.25 |
| Bra039975.1-P | Field mustard | peroxisome | 56.17 | 55.58 |
| Zm00001d007732_P002 | Maize | extracellular | 41.47 | 55.44 |
| PGSC0003DMT400004585 | Potato | extracellular | 38.32 | 54.68 |
| CDY71268 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 21.0 | 53.69 |
| CDY45439 | Canola | plastid | 55.64 | 53.67 |
| Zm00001d007728_P001 | Maize | cytosol | 19.68 | 52.82 |
| VIT_15s0045g01190.t01 | Wine grape | cytosol, nucleus, peroxisome | 47.77 | 46.55 |
| GSMUA_Achr5P13890_001 | Banana | nucleus | 19.16 | 45.62 |
| TraesCS1D01G213600.1 | Wheat | mitochondrion | 45.41 | 42.4 |
| TraesCS3D01G290900.1 | Wheat | cytosol | 33.6 | 38.44 |
| Solyc01g108790.1.1 | Tomato | nucleus | 16.01 | 34.66 |
| TraesCS7D01G352500.3 | Wheat | mitochondrion | 32.55 | 29.95 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G194800.2 | EnsemblPlantsGene:TraesCS1D01G194800 | Gene3D:3.90.226.40 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003860 |
| GO:GO:0016787 | InterPro:ClpP/crotonase-like_dom_sf | InterPro:HIBYL-CoA-H | PANTHER:PTHR43176 | PFAM:PF16113 | SUPFAM:SSF52096 |
| TIGR:cd06558 | MapMan:4.2.7.4 | MapMan:4.2.7.6.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:-:272541810..272549823
Molecular Weight (calculated)
41910.6 Da
IEP (calculated)
8.197
GRAVY (calculated)
-0.075
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPASGDSD QVLVEANGST RTLVLNRPKQ LNALSSAMVT GLLKCFISYE EETTVKLLIV KGKGRAFCAG GDVAEVAQSI NNDTWKYGAV FFRTEFLLNY
101: IIATYSKPQV SLLTGIVMGG GAGVSIHGRF RVATENTVFA MPETALGLFP DIGASYFLSR LPGFYGEYVG LTGARLDGAE MLACGLATHF VPLNRMSLLE
201: ESLKKVDTSD PFAICGIIDQ FSQQPSVKGS SAMNRMEIIN RCFSKRTVEE IISALEQEAP RVTDKLVTAA IQSLRKASPT SLKISLASIR EGRLQTVGEC
301: LRREYRMVCH VMRGDFSRDF FEGCRAILVD KDRNPKWMPP TLDQVHDGVV GKYFSKVDDP EWEDLNLPTR SSHGRRIVPK L
101: IIATYSKPQV SLLTGIVMGG GAGVSIHGRF RVATENTVFA MPETALGLFP DIGASYFLSR LPGFYGEYVG LTGARLDGAE MLACGLATHF VPLNRMSLLE
201: ESLKKVDTSD PFAICGIIDQ FSQQPSVKGS SAMNRMEIIN RCFSKRTVEE IISALEQEAP RVTDKLVTAA IQSLRKASPT SLKISLASIR EGRLQTVGEC
301: LRREYRMVCH VMRGDFSRDF FEGCRAILVD KDRNPKWMPP TLDQVHDGVV GKYFSKVDDP EWEDLNLPTR SSHGRRIVPK L
001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
Arabidopsis Description
CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.