Factsheet for PGSC0003DMT400066409

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400023026
PGSC0003DMT400044692
PGSC0003DMT400044886
PGSC0003DMT400049429
PGSC0003DMT400051417
PGSC0003DMT400070848
PGSC0003DMT400095815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	PGSC0003DMT400051417	AT1G14830.1	21798944
AT5G65940.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400023026	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400049429	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400044886	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400070848	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400095815	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004567	Potato	extracellular	51.08	53.79
PGSC0003DMT400066419	Potato	cytosol	92.81	53.75
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	57.55	30.08
GSMUA_Achr5P13900_001	Banana	cytosol	63.31	28.21
Zm00001d007732_P002	Maize	extracellular	56.12	27.37
CDY45442	Canola	mitochondrion	64.75	27.19
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	74.1	27.18
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	68.35	25.68
Zm00001d007726_P001	Maize	peroxisome	43.88	24.9
PGSC0003DMT400000054	Potato	cytosol	66.91	24.22
Bra018392.1-P	Field mustard	cytosol	64.75	24.19
Bra018395.1-P	Field mustard	cytosol	64.03	23.86
AT5G65940.1	Thale cress	peroxisome	64.03	23.55
KRH07311	Soybean	nucleus	64.03	23.0
TraesCS1D01G194800.2	Wheat	cytosol	62.59	22.83
TraesCS1B01G206000.1	Wheat	cytosol	62.59	22.83
AT2G30660.1	Thale cress	peroxisome	61.87	22.75
GSMUA_Achr5P13870_001	Banana	cytosol	64.03	22.53
GSMUA_Achr8P14800_001	Banana	cytosol	64.03	22.42
Bra031802.1-P	Field mustard	cytosol	60.43	22.34
CDY55104	Canola	cytosol	60.43	22.34
Zm00001d023779_P001	Maize	extracellular	61.87	22.28
CDY57769	Canola	peroxisome	59.71	22.25
AT2G30650.1	Thale cress	peroxisome	60.43	22.22
Bra039975.1-P	Field mustard	peroxisome	61.15	22.08
Zm00001d007740_P001	Maize	peroxisome	59.71	22.02
TraesCS1A01G190800.1	Wheat	plastid	61.87	21.94
CDY31775	Canola	peroxisome	60.43	21.93
EER91893	Sorghum	cytosol	59.71	21.5
CDY62818	Canola	peroxisome	61.87	21.45
CDX97894	Canola	peroxisome	59.71	21.39
CDY31769	Canola	peroxisome	61.15	21.2
CDY45439	Canola	plastid	59.71	21.01
KXG29172	Sorghum	peroxisome	58.27	20.93
Bra039968.1-P	Field mustard	peroxisome	59.71	20.8
Zm00001d021132_P004	Maize	extracellular	60.43	20.79
HORVU1Hr1G049960.6	Barley	mitochondrion	62.59	20.62
OQU84058	Sorghum	mitochondrion	59.71	20.24
PGSC0003DMT400054311	Potato	cytosol	23.02	20.13
PGSC0003DMT400069137	Potato	cytosol, mitochondrion	39.57	19.43
Zm00001d007746_P002	Maize	peroxisome	25.9	18.95
PGSC0003DMT400065713	Potato	cytosol, mitochondrion	32.37	18.75
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	49.64	17.65
Zm00001d007728_P001	Maize	cytosol	17.99	17.61
Os12t0264500-02	Rice	endoplasmic reticulum	62.59	16.96
PGSC0003DMT400079108	Potato	cytosol	41.01	16.57
PGSC0003DMT400066414	Potato	cytosol	20.14	16.37
PGSC0003DMT400041136	Potato	cytosol	39.57	15.85
PGSC0003DMT400020300	Potato	cytosol	40.29	14.58
PGSC0003DMT400004585	Potato	extracellular	27.34	14.23
PGSC0003DMT400057075	Potato	cytosol, plastid	38.85	13.5
PGSC0003DMT400004521	Potato	cytosol	17.99	10.68
PGSC0003DMT400066411	Potato	nucleus	7.91	7.53
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	6.47	6.04
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	2.88	5.88
PGSC0003DMT400043000	Potato	cytosol	5.04	3.59
GSMUA_Achr5P13890_001	Banana	nucleus	3.6	3.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400066409	EnsemblPlantsGene:PGSC0003DMG401025826	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6	PFAM:PF16113
PGSC:PGSC0003DMG401025826	SUPFAM:SSF52096	UniParc:UPI000294EBE5	UniProt:M1CFJ1	MapMan:50.3.1	:

Description

3-hydroxyisobutyryl-CoA hydrolase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG401025826]

Coordinates

chr1:+:85143050..85146896

Molecular Weight (calculated)

15304.5 Da

IEP (calculated)

6.490

GRAVY (calculated)

0.286

Length

139 amino acids

Sequence
(BLAST)

001: MATYSKTQVS ILDGIVMGGG AGASIHGRFR VATEKSVFAM PETDLGHFPD VGASYFLSRL PGFFGEYAGL TGSRLDGAEM LACGLATHFV SSDVYYLNFQ
101: LALPIYNCFC RKSIRFLLLL CVNWSVCYHN DNTDMPLYM

Best Arabidopsis Sequence Match ( AT2G30660.2 )
(BLAST)

001: MISRLLQLFR AYEEDPSVKL VILKGQGRAF CAGGDVPPVV QNMVQGKWRL GADFFRDQYT LNYVMATYSK PQVSILNGIV MGAGAGVSIH GRFRIATENT
101: VFAMPETSLG LFPDVGASYF LSRLPGFFGE YVGLTGARLD GAELLACGLA THFVPSTRLT ALETDLCKVG SSDPSFVSTI LDAYTQHPHL KQKSAYHRLD
201: VIDRCFSKRT MEEIISALER ETTQELDDWS LTTIRALKKS SPSSLKISLR SIREGRLQGV GHCLTREYRM VCHVMKGDLS KDLVEGCRAI LIDKDRNPKW
301: EPRRLEDMKD SMVDQFFERV EEEERWEDLK LSPRNNLHAL RIAAKL

Arabidopsis Description

Probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMB0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.