Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066424 | Potato | cytosol, nucleus, plastid | 25.0 | 58.82 |
| PGSC0003DMT400066411 | Potato | nucleus | 34.38 | 37.67 |
| PGSC0003DMT400066414 | Potato | cytosol | 33.12 | 30.99 |
| CDY71268 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 26.88 | 28.86 |
| Zm00001d007746_P002 | Maize | peroxisome | 33.12 | 27.89 |
| PGSC0003DMT400004521 | Potato | cytosol | 39.38 | 26.92 |
| GSMUA_Achr5P13870_001 | Banana | cytosol | 58.75 | 23.8 |
| PGSC0003DMT400004585 | Potato | extracellular | 38.12 | 22.85 |
| Solyc01g108790.1.1 | Tomato | nucleus | 25.0 | 22.73 |
| GSMUA_Achr4P17090_001 | Banana | cytosol, nucleus, peroxisome | 27.5 | 21.78 |
| Zm00001d007726_P001 | Maize | peroxisome | 33.12 | 21.63 |
| GSMUA_Achr8P14800_001 | Banana | cytosol | 53.12 | 21.41 |
| VIT_09s0002g07160.t01 | Wine grape | mitochondrion, peroxisome, plastid | 46.25 | 20.0 |
| Solyc01g080930.2.1 | Tomato | cytosol | 46.25 | 19.32 |
| TraesCS1B01G206000.1 | Wheat | cytosol | 45.62 | 19.16 |
| TraesCS1D01G194800.2 | Wheat | cytosol | 45.62 | 19.16 |
| KRH07311 | Soybean | nucleus | 45.62 | 18.86 |
| TraesCS1A01G190800.1 | Wheat | plastid | 45.0 | 18.37 |
| CDY55104 | Canola | cytosol | 43.12 | 18.35 |
| Bra031802.1-P | Field mustard | cytosol | 43.12 | 18.35 |
| AT5G65940.1 | Thale cress | peroxisome | 43.12 | 18.25 |
| PGSC0003DMT400000043 | Potato | cytosol, mitochondrion, peroxisome | 30.0 | 18.05 |
| CDY57769 | Canola | peroxisome | 41.88 | 17.96 |
| AT2G30650.1 | Thale cress | peroxisome | 41.88 | 17.72 |
| PGSC0003DMT400000054 | Potato | cytosol | 42.5 | 17.71 |
| EER91893 | Sorghum | cytosol | 42.5 | 17.62 |
| CDX97894 | Canola | peroxisome | 42.5 | 17.53 |
| AT2G30660.1 | Thale cress | peroxisome | 41.25 | 17.46 |
| Solyc01g108800.2.1 | Tomato | cytoskeleton, cytosol, peroxisome | 41.25 | 17.41 |
| CDY31775 | Canola | peroxisome | 41.25 | 17.23 |
| HORVU1Hr1G049960.6 | Barley | mitochondrion | 45.0 | 17.06 |
| CDY45442 | Canola | mitochondrion | 35.0 | 16.92 |
| Zm00001d021132_P004 | Maize | extracellular | 42.5 | 16.83 |
| Bra039968.1-P | Field mustard | peroxisome | 41.25 | 16.54 |
| KXG29172 | Sorghum | peroxisome | 40.0 | 16.54 |
| CDY31769 | Canola | peroxisome | 41.25 | 16.46 |
| VIT_15s0045g01190.t01 | Wine grape | cytosol, nucleus, peroxisome | 40.0 | 16.37 |
| CDY45439 | Canola | plastid | 40.0 | 16.2 |
| Zm00001d023779_P001 | Maize | extracellular | 38.75 | 16.06 |
| CDY62818 | Canola | peroxisome | 40.0 | 15.96 |
| OQU84058 | Sorghum | mitochondrion | 39.38 | 15.37 |
| Bra018395.1-P | Field mustard | cytosol | 35.62 | 15.28 |
| Bra018392.1-P | Field mustard | cytosol | 33.12 | 14.25 |
| Os12t0264500-02 | Rice | endoplasmic reticulum | 44.38 | 13.84 |
| Bra039975.1-P | Field mustard | peroxisome | 32.5 | 13.51 |
| GSMUA_Achr4P27030_001 | Banana | mitochondrion | 33.75 | 13.33 |
| GSMUA_Achr4P30390_001 | Banana | mitochondrion | 35.0 | 12.76 |
| Solyc01g094090.2.1 | Tomato | cytosol | 22.5 | 10.94 |
| Zm00001d007732_P002 | Maize | extracellular | 18.75 | 10.53 |
| Zm00001d007740_P001 | Maize | peroxisome | 24.38 | 10.34 |
| GSMUA_Achr6P00740_001 | Banana | cytosol | 23.12 | 9.81 |
| GSMUA_Achr9P06670_001 | Banana | plastid | 28.75 | 9.75 |
| GSMUA_Achr7P13260_001 | Banana | cytosol | 21.88 | 9.36 |
| GSMUA_Achr7P08560_001 | Banana | cytosol | 21.88 | 9.23 |
| VIT_15s0045g01170.t01 | Wine grape | cytosol | 8.12 | 8.9 |
| Zm00001d007728_P001 | Maize | cytosol | 7.5 | 8.45 |
| GSMUA_Achr5P13900_001 | Banana | cytosol | 12.5 | 6.41 |
| GSMUA_Achr4P17080_001 | Banana | mitochondrion | 6.25 | 5.78 |
| PGSC0003DMT400004567 | Potato | extracellular | 4.38 | 5.3 |
| PGSC0003DMT400066419 | Potato | cytosol | 7.5 | 5.0 |
| PGSC0003DMT400066409 | Potato | cytosol | 3.12 | 3.6 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P13890_001 | EnsemblPlants:GSMUA_Achr5T13890_001 | EnsemblPlantsGene:GSMUA_Achr5G13890_001 | Gene3D:3.90.226.40 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003860 | GO:GO:0016787 | InterPro:HIBYL-CoA-H | PANTHER:PTHR43176 | PANTHER:PTHR43176:SF6 | PFAM:PF16113 |
| UniParc:UPI0002956159 | UniProt:M0SYB8 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G13890_001]
Coordinates
chr5:-:9983992..9987927
Molecular Weight (calculated)
19062.6 Da
IEP (calculated)
7.625
GRAVY (calculated)
-0.727
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVDCQRSEQ NRRWKRPCDV LAEDTHGGFT IRVYSTRIRM QWRCHQEATW CSGSWWNSSW QCDTHDIIRE GRLQGVDRCL MKDFRLCCHI LRFEASKDFS
101: EGCRAILVDK DRNPKWEPSR LDLVDSKVLD QYFAEVDDPN WEDLKLPSRC SLDVKFVSKI
101: EGCRAILVDK DRNPKWEPSR LDLVDSKVLD QYFAEVDDPN WEDLKLPSRC SLDVKFVSKI
001: MASHSQVLVE EKSSVRILTF NRPKQLNALS FHMVSRLLQL FLAYEEDPSV KLVVLKGQGR AFSAGGDIPP IVRDILQGKL IRGAHYFKVG YTLNYVLSTY
101: RKPQVSILNG IVMGGGAGLS TNGRFRIATE NTVFAMPETA LGLFPDVGAS YFLSRLPGFF GEYVGLTGAR LDGAEMLACG LATHFVPSIS LTALEAELYK
201: VGSSNQTFIS TILDAYAEYP HLNQHSSYHR LDVIDRCFSK RTVEEIFSAL EREVTQKPND WLLATIQALE KASPSCLKIS LRSIREGRLQ GVGQCLIREY
301: RMVCHVMKGD ISKDFVEGCR AVLIDKDRNP KWQPRRLEDV TDSMVDQYFE RVEDEEGWED LKFPPRNNLP ALAIAAKL
101: RKPQVSILNG IVMGGGAGLS TNGRFRIATE NTVFAMPETA LGLFPDVGAS YFLSRLPGFF GEYVGLTGAR LDGAEMLACG LATHFVPSIS LTALEAELYK
201: VGSSNQTFIS TILDAYAEYP HLNQHSSYHR LDVIDRCFSK RTVEEIFSAL EREVTQKPND WLLATIQALE KASPSCLKIS LRSIREGRLQ GVGQCLIREY
301: RMVCHVMKGD ISKDFVEGCR AVLIDKDRNP KWQPRRLEDV TDSMVDQYFE RVEDEEGWED LKFPPRNNLP ALAIAAKL
Arabidopsis Description
Probable 3-hydroxyisobutyryl-CoA hydrolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEY5]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.