Factsheet for PGSC0003DMT400000043

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
peroxisome 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400023026
PGSC0003DMT400044692
PGSC0003DMT400044886
PGSC0003DMT400049429
PGSC0003DMT400051417
PGSC0003DMT400070848
PGSC0003DMT400095815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	PGSC0003DMT400051417	AT1G14830.1	21798944
AT5G65940.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400023026	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400049429	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400044886	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400070848	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400095815	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066414	Potato	cytosol	46.24	71.93
PGSC0003DMT400000054	Potato	cytosol	96.62	66.93
PGSC0003DMT400004567	Potato	extracellular	33.08	66.67
PGSC0003DMT400066411	Potato	nucleus	36.09	65.75
PGSC0003DMT400004521	Potato	cytosol	53.76	61.11
Solyc01g094090.2.1	Tomato	cytosol	73.68	59.57
PGSC0003DMT400066409	Potato	cytosol	30.08	57.55
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	13.91	54.41
PGSC0003DMT400004585	Potato	extracellular	54.51	54.31
CDY45442	Canola	mitochondrion	61.65	49.55
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	65.79	47.3
Zm00001d007726_P001	Maize	peroxisome	42.48	46.12
KRH07311	Soybean	nucleus	65.79	45.22
Bra018395.1-P	Field mustard	cytosol	63.16	45.04
AT5G65940.1	Thale cress	peroxisome	62.03	43.65
AT2G30650.1	Thale cress	peroxisome	62.03	43.65
AT2G30660.1	Thale cress	peroxisome	61.65	43.39
CDY57769	Canola	peroxisome	60.53	43.16
Bra018392.1-P	Field mustard	cytosol	60.15	43.01
Bra031802.1-P	Field mustard	cytosol	60.53	42.82
CDY55104	Canola	cytosol	60.53	42.82
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	23.68	42.28
TraesCS1D01G194800.2	Wheat	cytosol	60.53	42.26
GSMUA_Achr5P13870_001	Banana	cytosol	62.03	41.77
Zm00001d007746_P002	Maize	peroxisome	29.7	41.58
CDY31775	Canola	peroxisome	59.77	41.51
CDX97894	Canola	peroxisome	60.53	41.49
TraesCS1B01G206000.1	Wheat	cytosol	59.4	41.47
GSMUA_Achr5P13900_001	Banana	cytosol	48.5	41.35
EER91893	Sorghum	cytosol	59.77	41.19
TraesCS1A01G190800.1	Wheat	plastid	60.15	40.82
CDY62818	Canola	peroxisome	61.28	40.65
GSMUA_Achr8P14800_001	Banana	cytosol	60.53	40.55
CDY31769	Canola	peroxisome	60.9	40.4
Bra039968.1-P	Field mustard	peroxisome	60.53	40.35
CDY45439	Canola	plastid	59.77	40.25
Zm00001d023779_P001	Maize	extracellular	57.89	39.9
Bra039975.1-P	Field mustard	peroxisome	57.52	39.74
Zm00001d021132_P004	Maize	extracellular	59.4	39.11
OQU84058	Sorghum	mitochondrion	59.02	38.29
Zm00001d007732_P002	Maize	extracellular	40.98	38.25
KXG29172	Sorghum	peroxisome	55.64	38.24
HORVU1Hr1G049960.6	Barley	mitochondrion	60.15	37.91
PGSC0003DMT400069137	Potato	cytosol, mitochondrion	39.85	37.46
PGSC0003DMT400066419	Potato	cytosol	33.46	37.08
PGSC0003DMT400054311	Potato	cytosol	21.8	36.48
Zm00001d007740_P001	Maize	peroxisome	50.0	35.28
PGSC0003DMT400043000	Potato	cytosol	25.56	34.87
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	51.13	34.78
Os12t0264500-02	Rice	endoplasmic reticulum	60.15	31.19
GSMUA_Achr5P13890_001	Banana	nucleus	18.05	30.0
PGSC0003DMT400020300	Potato	cytosol	42.11	29.17
Zm00001d007728_P001	Maize	cytosol	14.66	27.46
PGSC0003DMT400079108	Potato	cytosol	34.59	26.74
PGSC0003DMT400057075	Potato	cytosol, plastid	39.85	26.5
PGSC0003DMT400041136	Potato	cytosol	33.46	25.65
PGSC0003DMT400065713	Potato	cytosol, mitochondrion	18.8	20.83

Protein Annotations

EnsemblPlants:PGSC0003DMT400000043	EnsemblPlantsGene:PGSC0003DMG400000014	Gene3D:3.90.226.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6	PFAM:PF16113
PGSC:PGSC0003DMG400000014	SEG:seg	SUPFAM:SSF52096	UniParc:UPI0002952293	UniProt:M0ZG08	MapMan:50.3.1

Description

Enoyl-CoA-hydratase [Source:PGSC_GENE;Acc:PGSC0003DMG400000014]

Coordinates

chr1:+:71644624..71648549

Molecular Weight (calculated)

30155.4 Da

IEP (calculated)

7.590

GRAVY (calculated)

-0.297

Length

266 amino acids

Sequence
(BLAST)

001: NWQLGANYLR EQYTLIYMIA TYRKPQVSIL NGIVMGGGAG VSIHGRFRVA TEKSVFAMPE TAMGLFPDVG EYAGLTGSRF DGAEMLACGL ATHFVSSDKL
101: PLLEQELVKV NTSDPDAISA IISRFSHIPK LKEGSPYHKM KIIDRCFSRR TIEEIISTLE SEALDKKEED WISSTIQLLK KASPTSLKIS LRLIREGRLQ
201: GVDICLVWIQ GHTYRKDRNP KWDPSRVELV RDVDVDRYYT KIDDEDWEDL KLPPRSYLPP HAIAKL

Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.