Factsheet for PGSC0003DMT400004585

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 5
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400023026
PGSC0003DMT400044692
PGSC0003DMT400044886
PGSC0003DMT400049429
PGSC0003DMT400051417
PGSC0003DMT400070848
PGSC0003DMT400095815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	PGSC0003DMT400051417	AT1G14830.1	21798944
AT5G65940.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400023026	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400049429	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400044886	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400070848	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400095815	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	20.6	80.88
PGSC0003DMT400066411	Potato	nucleus	41.95	76.71
PGSC0003DMT400066414	Potato	cytosol	44.19	69.01
PGSC0003DMT400004521	Potato	cytosol	60.3	68.8
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	32.21	57.72
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	54.31	54.51
Zm00001d007726_P001	Maize	peroxisome	48.31	52.65
Zm00001d007746_P002	Maize	peroxisome	35.21	49.47
PGSC0003DMT400000054	Potato	cytosol	64.42	44.79
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	58.43	42.16
CDY45442	Canola	mitochondrion	52.06	41.99
PGSC0003DMT400004567	Potato	extracellular	20.6	41.67
PGSC0003DMT400043000	Potato	cytosol	30.34	41.54
CDY57769	Canola	peroxisome	57.68	41.29
AT5G65940.1	Thale cress	peroxisome	58.05	41.01
KRH07311	Soybean	nucleus	59.18	40.83
CDY55104	Canola	cytosol	56.93	40.43
Bra031802.1-P	Field mustard	cytosol	56.93	40.43
AT2G30650.1	Thale cress	peroxisome	56.55	39.95
CDX97894	Canola	peroxisome	56.93	39.18
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	57.3	39.13
AT2G30660.1	Thale cress	peroxisome	55.06	38.89
CDY31775	Canola	peroxisome	55.43	38.64
EER91893	Sorghum	cytosol	55.81	38.6
TraesCS1D01G194800.2	Wheat	cytosol	54.68	38.32
GSMUA_Achr5P13890_001	Banana	nucleus	22.85	38.12
Bra018392.1-P	Field mustard	cytosol	52.81	37.9
Bra039968.1-P	Field mustard	peroxisome	56.55	37.84
PGSC0003DMT400054311	Potato	cytosol	22.47	37.74
CDY31769	Canola	peroxisome	56.55	37.66
TraesCS1B01G206000.1	Wheat	cytosol	53.56	37.53
TraesCS1A01G190800.1	Wheat	plastid	55.06	37.5
CDY45439	Canola	plastid	55.06	37.22
CDY62818	Canola	peroxisome	55.81	37.16
Bra018395.1-P	Field mustard	cytosol	51.31	36.73
Zm00001d021132_P004	Maize	extracellular	55.06	36.39
KXG29172	Sorghum	peroxisome	52.06	35.92
OQU84058	Sorghum	mitochondrion	55.06	35.85
GSMUA_Achr5P13870_001	Banana	cytosol	52.81	35.7
Zm00001d023779_P001	Maize	extracellular	50.94	35.23
Bra039975.1-P	Field mustard	peroxisome	50.19	34.81
PGSC0003DMT400069137	Potato	cytosol, mitochondrion	36.7	34.63
GSMUA_Achr8P14800_001	Banana	cytosol	51.31	34.51
HORVU1Hr1G049960.6	Barley	mitochondrion	54.31	34.36
Zm00001d007732_P002	Maize	extracellular	35.58	33.33
Zm00001d007740_P001	Maize	peroxisome	43.07	30.5
GSMUA_Achr5P13900_001	Banana	cytosol	35.21	30.13
Os12t0264500-02	Rice	endoplasmic reticulum	55.06	28.66
PGSC0003DMT400066409	Potato	cytosol	14.23	27.34
PGSC0003DMT400020300	Potato	cytosol	38.2	26.56
PGSC0003DMT400057075	Potato	cytosol, plastid	38.95	26.0
PGSC0003DMT400041136	Potato	cytosol	31.46	24.21
PGSC0003DMT400079108	Potato	cytosol	30.34	23.55
PGSC0003DMT400066419	Potato	cytosol	17.98	20.0
PGSC0003DMT400065713	Potato	cytosol, mitochondrion	16.85	18.75
Zm00001d007728_P001	Maize	cytosol	4.49	8.45

Protein Annotations

Gene3D:3.90.226.40	MapMan:50.3.1	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:HIBYL-CoA-H	UniProt:M0ZNN2
PFAM:PF16113	EnsemblPlantsGene:PGSC0003DMG400001817	PGSC:PGSC0003DMG400001817	EnsemblPlants:PGSC0003DMT400004585	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6
SUPFAM:SSF52096	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000295A72B	SEG:seg	:

Description

Enoyl-CoA-hydratase [Source:PGSC_GENE;Acc:PGSC0003DMG400001817]

Coordinates

chr1:-:67805490..67808158

Molecular Weight (calculated)

30376.8 Da

IEP (calculated)

4.934

GRAVY (calculated)

-0.134

Length

267 amino acids

Sequence
(BLAST)

001: MGYDFGILWM SMLMSQLIFL ILLLKSVESN LLFRANICDM MRDIWTGIDG SGEYAGLTGA RLDGADMLAC GLATHFVPSE RLPFLEQELV KINTSDPDVI
101: SAIISHFSNI PKLKAESPYN KMRIIDCCFS RRTVEEIISS LGNEALNNKD DWISSTIQSM KKASPISLKI TLRSIRQGRL QDVGSCLIRE YRMVCHVFRG
201: EFSKDFFEGC RAILIDKDRN PKWEPSKLEQ ISDDDVDGYF SKIEDEDWED LKLPPRSNLL PYAIAKL

Best Arabidopsis Sequence Match ( AT2G30660.2 )
(BLAST)

001: MISRLLQLFR AYEEDPSVKL VILKGQGRAF CAGGDVPPVV QNMVQGKWRL GADFFRDQYT LNYVMATYSK PQVSILNGIV MGAGAGVSIH GRFRIATENT
101: VFAMPETSLG LFPDVGASYF LSRLPGFFGE YVGLTGARLD GAELLACGLA THFVPSTRLT ALETDLCKVG SSDPSFVSTI LDAYTQHPHL KQKSAYHRLD
201: VIDRCFSKRT MEEIISALER ETTQELDDWS LTTIRALKKS SPSSLKISLR SIREGRLQGV GHCLTREYRM VCHVMKGDLS KDLVEGCRAI LIDKDRNPKW
301: EPRRLEDMKD SMVDQFFERV EEEERWEDLK LSPRNNLHAL RIAAKL

Arabidopsis Description

Probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMB0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.