Factsheet for PGSC0003DMT400043000

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066411	Potato	nucleus	32.82	43.84
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	12.82	36.76
PGSC0003DMT400004521	Potato	cytosol	43.59	36.32
PGSC0003DMT400066414	Potato	cytosol	30.26	34.5
PGSC0003DMT400004585	Potato	extracellular	41.54	30.34
Solyc01g090700.2.1	Tomato	mitochondrion	62.56	30.2
Zm00001d029860_P001	Maize	plasma membrane	55.9	26.85
TraesCS1B01G224200.1	Wheat	mitochondrion	55.38	26.47
TraesCS1A01G210300.2	Wheat	mitochondrion	55.38	26.47
TraesCS1D01G213600.1	Wheat	mitochondrion	55.38	26.47
GSMUA_Achr4P27030_001	Banana	mitochondrion	54.87	26.42
EER91964	Sorghum	mitochondrion	54.36	26.11
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	34.87	25.56
GSMUA_Achr4P30390_001	Banana	mitochondrion	56.41	25.06
VIT_00s0229g00140.t01	Wine grape	mitochondrion	53.85	24.82
KRH05370	Soybean	mitochondrion	51.79	24.82
KRH15650	Soybean	mitochondrion	51.79	24.82
PGSC0003DMT400069137	Potato	cytosol, mitochondrion	35.9	24.73
Bra010219.1-P	Field mustard	mitochondrion	51.79	24.63
Os10t0552900-01	Rice	mitochondrion	51.79	24.57
CDY39880	Canola	mitochondrion	51.28	24.39
CDY23311	Canola	mitochondrion	51.28	24.39
AT4G31810.1	Thale cress	mitochondrion	50.26	23.96
PGSC0003DMT400000054	Potato	cytosol	39.49	20.05
PGSC0003DMT400020300	Potato	cytosol	37.44	19.01
PGSC0003DMT400054311	Potato	cytosol	15.38	18.87
PGSC0003DMT400057075	Potato	cytosol, plastid	37.44	18.25
PGSC0003DMT400041136	Potato	cytosol	30.26	17.0
PGSC0003DMT400079108	Potato	cytosol	26.67	15.12
PGSC0003DMT400004567	Potato	extracellular	7.18	10.61
PGSC0003DMT400065713	Potato	cytosol, mitochondrion	12.31	10.0
PGSC0003DMT400066409	Potato	cytosol	3.59	5.04
PGSC0003DMT400066419	Potato	cytosol	4.62	3.75

Protein Annotations

EnsemblPlants:PGSC0003DMT400043000	EnsemblPlantsGene:PGSC0003DMG400016674	Gene3D:3.90.226.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF4	PFAM:PF16113
PGSC:PGSC0003DMG400016674	SUPFAM:SSF52096	UniParc:UPI0002954E1E	UniProt:M1BDW6	MapMan:35.1	:

Description

3-hydroxyisobutyryl-CoA hydrolase 1, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400016674]

Coordinates

chr10:-:29830617..29834392

Molecular Weight (calculated)

22318.7 Da

IEP (calculated)

4.744

GRAVY (calculated)

-0.381

Length

195 amino acids

Sequence
(BLAST)

001: MCSDGFSGQQ RLPLVEEQLG KLMTDDPSVI GNCLAKFEDV VHLDQMSVFQ RIEILNKCFS NETVEEIIDS LESETAKTAD AWCISTLKRL TEVSPLSLKV
101: SLRSIREGRN QTLDQCIIRE YRMTLQAFFG HITRDYCEGV RARMLDKDHS PKWDPPSLEH VTNDMVDEYF SPLTAIEPDL ELPIQQRKPF AIGKH

Best Arabidopsis Sequence Match ( AT3G60510.1 )
(BLAST)

001: MHNAKGLLGR IVRDKLWRFG YRRSLCSLKL TSEDLDYQVL VEGSGCSRTA ILNRPPALNA LTTHMGYRLQ KLYKNWEEDP NIGFVMMKGS GRAFCAGGDI
101: VSLYHLRTRG SPDAIREFFS SLYSFIYLLG TYLKPHVAIL NGVTMGGGTG VSIPGTFRVA TDRTIFATPE TIIGFHPDAG ASFNLSHLPG RLGEYLGLTG
201: LKLSGAEMLA CGLATHYIRS EEVPVMEEQL KKLLTDDPSV VESCLEKCAE VAHPEKTGVI RRIDLLEKCF SHDTVEEIID SLEIEASRRK DTWCITTLRR
301: LKESSPLSLK VALRSIREGR LQTLDQCLIR EYRMSLQGLI GPMSGNFCEG VRARLIDKDE APKWDPPSLE KVSEDMVDDY FCALTPTEPD LDLPVKLRES
401: I

Arabidopsis Description

ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Source:UniProtKB/TrEMBL;Acc:F4JBV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.