Factsheet for Solyc01g090700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043000	Potato	cytosol	30.2	62.56
VIT_00s0229g00140.t01	Wine grape	mitochondrion	60.15	57.45
Solyc05g032690.2.1	Tomato	cytosol, mitochondrion, nucleus	12.62	57.3
Solyc10g085630.1.1	Tomato	mitochondrion	57.67	56.83
Solyc07g043690.1.1	Tomato	cytosol	22.52	47.15
Solyc01g094090.2.1	Tomato	cytosol	37.62	46.2
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	42.08	44.85
Solyc01g080930.2.1	Tomato	cytosol	42.33	44.65
Solyc05g032680.2.1	Tomato	mitochondrion	11.88	42.48
Solyc12g011160.1.1	Tomato	cytosol	38.86	40.89
Solyc07g044710.1.1	Tomato	plastid	37.87	38.83
Solyc06g054520.1.1	Tomato	cytosol	38.12	37.38
Solyc07g043680.2.1	Tomato	cytosol	36.63	37.19
Solyc07g044720.1.1	Tomato	plastid	38.37	36.82
Solyc07g044730.2.1	Tomato	endoplasmic reticulum, vacuole	37.38	35.36
Solyc07g022880.2.1	Tomato	cytosol	11.14	31.25
Solyc05g018410.1.1	Tomato	plastid	22.28	30.0
Solyc07g044740.1.1	Tomato	cytosol	9.41	29.23
Solyc01g108790.1.1	Tomato	nucleus	12.13	27.84

Protein Annotations

EnsemblPlants:Solyc01g090700.2.1	EnsemblPlantsGene:Solyc01g090700.2	Gene3D:3.90.226.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF4	PFAM:PF16113
SUPFAM:SSF52096	UniParc:UPI0002767E12	UniProt:K4AZ11	MapMan:50.3.1	:	:

Description

No Description!

Coordinates

chr1:-:84338561..84347076

Molecular Weight (calculated)

45120.8 Da

IEP (calculated)

5.482

GRAVY (calculated)

-0.221

Length

404 amino acids

Sequence
(BLAST)

001: MQSFKSTSIL RRFLQKSRLV SQSRSFCGVS SNVLIDEPES TVLVEGKASS RTAILNRPHA LNAINYSVAS RLMKLYKNWE DDPDIGFVVL KGNDRAFSAG
101: GDIVSLYNLL KQGNFQDCKE FCWTIYSLIY VVGTYLKPHV ALLNGVTMGG GAGISIPGTF RIATEKTVFA TPETLIGYHP DAGASFYLSR LPGYLGEYLA
201: LTGDKISGAE MISCGLATHY SHSAKIPLIE EQLGTLITDD PSVIERSLEN WGEIVHPEPE SILHRIETLD KCFSHDTVEE IIDALESEAA KQDAWCVATL
301: RKLQETSPLS LKVSLRSIRE GRHQTLDQCL RREYRMSVQA LSGQITSDFR EGVRARLVDR DLAPKWDPPT LEKVTDDMVD QYFSRLTAFE PELELPTQQR
401: EAFT

Best Arabidopsis Sequence Match ( AT3G60510.1 )
(BLAST)

001: MHNAKGLLGR IVRDKLWRFG YRRSLCSLKL TSEDLDYQVL VEGSGCSRTA ILNRPPALNA LTTHMGYRLQ KLYKNWEEDP NIGFVMMKGS GRAFCAGGDI
101: VSLYHLRTRG SPDAIREFFS SLYSFIYLLG TYLKPHVAIL NGVTMGGGTG VSIPGTFRVA TDRTIFATPE TIIGFHPDAG ASFNLSHLPG RLGEYLGLTG
201: LKLSGAEMLA CGLATHYIRS EEVPVMEEQL KKLLTDDPSV VESCLEKCAE VAHPEKTGVI RRIDLLEKCF SHDTVEEIID SLEIEASRRK DTWCITTLRR
301: LKESSPLSLK VALRSIREGR LQTLDQCLIR EYRMSLQGLI GPMSGNFCEG VRARLIDKDE APKWDPPSLE KVSEDMVDDY FCALTPTEPD LDLPVKLRES
401: I

Arabidopsis Description

ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Source:UniProtKB/TrEMBL;Acc:F4JBV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.